- Basic information
- CohesinDB ID: CDBP00413945
- Locus: chr21-17447844-17448535
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Data sourse: GSE206145, GSE62063, GSE67783
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Cell type: RPE, HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 86%,
"5_TxWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, SMC1A, PPARG, FOXA2, EBF1, TOP2A, NME2, CTBP1, ZSCAN16, ZBTB17, SMAD3, DUX4, FOXA1, DDX5, HOXB13, ZNF300, ERG, RELA, ZNF384, JUNB, MYC, SMARCA4, GATA4, ZNF362, BRG1, BRCA1, ARNT, NKX2-1, GATA3, OTX2, GABPA, STAT3, TP63, NKX3-1, FOS, RCOR1, SFPQ, MED1, ZNF750, CEBPB, KLF4, TRIM28, CREB1, PIAS1, KDM5B, EZH2, NR1H2, TP53, GRHL2, NFKB1, PHOX2B, JUN, BAF155, ZNF664, AR, SOX9, GATA2, ASH2L, BRD4, FOXP1, GATAD2A, TFAP2C
- Target gene symbol (double-evidenced CRMs): CXADR,C21orf91
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops