Deatailed information for cohesin site CDBP00414006
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00414006
- Locus: chr21-17615995-17616481
- Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783
- Cell type: RPE, Fibroblast, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 87%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): BTG3,C21orf91,USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene: ENSG00000155313, ENSG00000154640, ENSG00000154642,
- Related loop: chr21:14075000-14100000~~chr21:17600000-17625000, chr21:14375000-14400000~~chr21:17600000-17625000, chr21:15000000-15025000~~chr21:17600000-17625000, chr21:15600000-15625000~~chr21:17600000-17625000, chr21:15725000-15750000~~chr21:17600000-17625000, chr21:16550000-16575000~~chr21:17600000-17625000, chr21:17597892-17599183~~chr21:17611016-17612344, chr21:17600000-17625000~~chr21:17800000-17825000, chr21:17600000-17625000~~chr21:17900000-17925000, chr21:17600000-17625000~~chr21:25725000-25750000,
Tools:
- Assay
