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Basic information

CohesinDB ID: CDBP00414009

Locus: chr21-17650364-17650607

Data sourse: ENCSR054FKH, GSE72082, ENCSR917QNE

Cell type: Liver, Hep-G2

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 60% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 85%, "14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: SKI, NFIA, THAP11, BCL6, PPARG, HMG20A, CEBPA, FOXA2, TOP2A, SOX13, ZSCAN16, FOXA1, TCF7, SAP130, ARID3A, RXRB, HOXB13, HNF4G, KDM1A, TFAP4, YY1, RARA, ZNF384, MYBL2, KAT2B, NFIC, SMARCA4, HOMEZ, RAD21, BRCA1, GRHL3, RXRA, MXD4, SMAD4, MAX, ZNF614, HMGXB4, MIER3, NR2F6, CEBPG, TEAD3, TEAD1, NR2F2, MLX, KLF6, TBL1XR1, ZNF3, RCOR2, ELF3, NUP98-HOXA9, KAT8, SP1, EP300, MIXL1, HNF4A, TFE3, SOX5, PHF5A, IKZF5, REST, HDAC2, ZNF644, ZGPAT, JUND, FOXP1, CUX1, RFX3, NFIL3, FOXA3, ZNF175, GATAD2A, RBPJ

Target gene symbol (double-evidenced CRMs): TMPRSS15,C21orf91,CXADR

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000154639, ENSG00000154642, ENSG00000154646,

Tools:

Assay

refGene

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Cohesin site CDBP00414009

CDBP00414009 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00414009

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