- Basic information
- CohesinDB ID: CDBP00414009
- Locus: chr21-17650364-17650607
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Data sourse: ENCSR054FKH, GSE72082, ENCSR917QNE
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Cell type: Liver, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SKI, NFIA, THAP11, BCL6, PPARG, HMG20A, CEBPA, FOXA2, TOP2A, SOX13, ZSCAN16, FOXA1, TCF7, SAP130, ARID3A, RXRB, HOXB13, HNF4G, KDM1A, TFAP4, YY1, RARA, ZNF384, MYBL2, KAT2B, NFIC, SMARCA4, HOMEZ, RAD21, BRCA1, GRHL3, RXRA, MXD4, SMAD4, MAX, ZNF614, HMGXB4, MIER3, NR2F6, CEBPG, TEAD3, TEAD1, NR2F2, MLX, KLF6, TBL1XR1, ZNF3, RCOR2, ELF3, NUP98-HOXA9, KAT8, SP1, EP300, MIXL1, HNF4A, TFE3, SOX5, PHF5A, IKZF5, REST, HDAC2, ZNF644, ZGPAT, JUND, FOXP1, CUX1, RFX3, NFIL3, FOXA3, ZNF175, GATAD2A, RBPJ
- Target gene symbol (double-evidenced CRMs): TMPRSS15,C21orf91,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154639,
ENSG00000154642,
ENSG00000154646,
- Related loop:
chr21:16825000-16850000~~chr21:17650000-17675000,
chr21:17550000-17575000~~chr21:17650000-17675000,
chr21:17650000-17675000~~chr21:17750000-17775000,
chr21:17650000-17675000~~chr21:17775000-17800000,
chr21:17650000-17675000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:18000000-18025000,
chr21:17650000-17675000~~chr21:18050000-18075000,
chr21:17650000-17675000~~chr21:18225000-18250000,
chr21:17650000-17675000~~chr21:18250000-18275000,
chr21:17650000-17675000~~chr21:18375000-18400000,
chr21:17650000-17675000~~chr21:18525000-18550000,