- Basic information
- CohesinDB ID: CDBP00414012
- Locus: chr21-17662469-17662816
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783
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Cell type: RPE, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, OGG1
- Target gene symbol (double-evidenced CRMs): TMPRSS15,CXADR,C21orf91
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000154639,
ENSG00000154642,
ENSG00000154646,
- Related loop:
chr21:16825000-16850000~~chr21:17650000-17675000,
chr21:17550000-17575000~~chr21:17650000-17675000,
chr21:17650000-17675000~~chr21:17750000-17775000,
chr21:17650000-17675000~~chr21:17775000-17800000,
chr21:17650000-17675000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:18000000-18025000,
chr21:17650000-17675000~~chr21:18050000-18075000,
chr21:17650000-17675000~~chr21:18225000-18250000,
chr21:17650000-17675000~~chr21:18250000-18275000,
chr21:17650000-17675000~~chr21:18375000-18400000,
chr21:17650000-17675000~~chr21:18525000-18550000,