- Basic information
- CohesinDB ID: CDBP00414013
- Locus: chr21-17668672-17669176
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 69%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, NANOG, CEBPA, POU5F1, ZFX, FOXA1, NEUROD1, SMARCA4, CHD7, SP140, GRHL3, NKX2-1, GATA3, MORC2, MAX, GATA1, CEBPB, TP53, ESR1, SETDB1, USF2, BRD2, USF1, BCL11A, NUTM1, EP300, BHLHE40, AR, TAF1, RYBP, GATA2, E2F6, BRD4, BCOR
- Target gene symbol (double-evidenced CRMs): C21orf91,TMPRSS15,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000154639,
ENSG00000154642,
ENSG00000154646,
- Related loop:
chr21:16825000-16850000~~chr21:17650000-17675000,
chr21:17550000-17575000~~chr21:17650000-17675000,
chr21:17650000-17675000~~chr21:17750000-17775000,
chr21:17650000-17675000~~chr21:17775000-17800000,
chr21:17650000-17675000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:18000000-18025000,
chr21:17650000-17675000~~chr21:18050000-18075000,
chr21:17650000-17675000~~chr21:18225000-18250000,
chr21:17650000-17675000~~chr21:18250000-18275000,
chr21:17650000-17675000~~chr21:18375000-18400000,
chr21:17650000-17675000~~chr21:18525000-18550000,