- Basic information
- CohesinDB ID: CDBP00414055
- Locus: chr21-17824544-17824781
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 90%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): BTG3,CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154639,
ENSG00000154640,
- Related loop:
chr21:16575000-16600000~~chr21:17800000-17825000,
chr21:17375000-17400000~~chr21:17825000-17850000,
chr21:17450000-17475000~~chr21:17825000-17850000,
chr21:17575000-17600000~~chr21:17800000-17825000,
chr21:17600000-17625000~~chr21:17800000-17825000,
chr21:17675000-17700000~~chr21:17800000-17825000,
chr21:17678482-17679945~~chr21:17817779-17820820,
chr21:17688092-17690151~~chr21:17817660-17820812,
chr21:17800000-17825000~~chr21:17900000-17925000,
chr21:17817784-17820842~~chr21:17901964-17904398,
chr21:17818177-17820852~~chr21:17902238-17904394,
chr21:17825000-17850000~~chr21:18000000-18025000,
chr21:17825000-17850000~~chr21:18225000-18250000,