- Basic information
- CohesinDB ID: CDBP00414067
- Locus: chr21-17907747-17907969
-
Data sourse: GSE206145-NatGen2015, GSE67783
-
Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZBTB48, TRP47, SP140, RELA
- Target gene symbol (double-evidenced CRMs): C21orf91,BTG3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154640,
ENSG00000154642,
- Related loop:
chr21:17350000-17375000~~chr21:17900000-17925000,
chr21:17600000-17625000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:17900000-17925000,
chr21:17675000-17700000~~chr21:17900000-17925000,
chr21:17677615-17680352~~chr21:17901964-17904398,
chr21:17677812-17680265~~chr21:17901949-17904160,
chr21:17677823-17680312~~chr21:17901986-17904341,
chr21:17677849-17680474~~chr21:17901176-17904403,
chr21:17677927-17680289~~chr21:17902014-17904745,
chr21:17678060-17680287~~chr21:17901956-17904369,
chr21:17678109-17680458~~chr21:17901397-17904317,
chr21:17678125-17680282~~chr21:17901961-17904290,
chr21:17678127-17680159~~chr21:17902380-17904101,
chr21:17678133-17680457~~chr21:17902253-17904403,
chr21:17678134-17680490~~chr21:17901970-17904434,
chr21:17678148-17680221~~chr21:17901122-17904107,
chr21:17678179-17680164~~chr21:17901225-17904031,
chr21:17678183-17680160~~chr21:17902324-17903958,
chr21:17678186-17680190~~chr21:17901236-17904006,
chr21:17678201-17680185~~chr21:17902269-17904057,
chr21:17678230-17680476~~chr21:17901968-17904401,
chr21:17678232-17680291~~chr21:17902267-17904328,
chr21:17678243-17680235~~chr21:17902262-17904303,
chr21:17678249-17680466~~chr21:17902018-17904116,
chr21:17678253-17680475~~chr21:17902276-17904784,
chr21:17678257-17680250~~chr21:17901952-17904689,
chr21:17678261-17680309~~chr21:17902245-17904789,
chr21:17678268-17680024~~chr21:17901970-17904396,
chr21:17678273-17680232~~chr21:17901976-17904341,
chr21:17678274-17680496~~chr21:17901990-17904210,
chr21:17678275-17679993~~chr21:17902250-17904345,
chr21:17678276-17680252~~chr21:17902239-17904213,
chr21:17678279-17680475~~chr21:17902065-17904288,
chr21:17678306-17680047~~chr21:17901389-17904158,
chr21:17678316-17680058~~chr21:17902232-17904144,
chr21:17678321-17680260~~chr21:17902253-17904292,
chr21:17678321-17680290~~chr21:17901939-17904304,
chr21:17678335-17680284~~chr21:17902210-17904283,
chr21:17678360-17680330~~chr21:17902269-17904310,
chr21:17678382-17680217~~chr21:17902287-17903894,
chr21:17678407-17680331~~chr21:17902187-17904333,
chr21:17678440-17680173~~chr21:17902403-17904032,
chr21:17678473-17680046~~chr21:17902405-17904120,
chr21:17678482-17679945~~chr21:17901964-17904175,
chr21:17678505-17680271~~chr21:17901920-17904293,
chr21:17688092-17690151~~chr21:17902276-17904784,
chr21:17688135-17689984~~chr21:17902187-17904333,
chr21:17688142-17689741~~chr21:17901956-17904369,
chr21:17688212-17690371~~chr21:17901397-17904317,
chr21:17688306-17691525~~chr21:17901964-17904175,
chr21:17688429-17689633~~chr21:17902269-17904057,
chr21:17700000-17725000~~chr21:17900000-17925000,
chr21:17725000-17750000~~chr21:17900000-17925000,
chr21:17750000-17775000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:17900000-17925000,
chr21:17800000-17825000~~chr21:17900000-17925000,
chr21:17817784-17820842~~chr21:17901964-17904398,
chr21:17818177-17820852~~chr21:17902238-17904394,