- Basic information
- CohesinDB ID: CDBP00414070
- Locus: chr21-17923497-17927046
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, GSE115248, GSE105004, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, GSE55407, ENCSR000BTQ, GSE129526, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, GSE62063, ENCSR167MTG, ENCSR956LGB, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 64% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.178
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 64%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX5, OGG1, ZFX
- Target gene symbol (double-evidenced CRMs): C21orf91,TMPRSS15,BTG3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 128
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154640,
ENSG00000154642,
ENSG00000154646,
- Related loop:
chr21:17350000-17375000~~chr21:17900000-17925000,
chr21:17385938-17388768~~chr21:17924257-17926724,
chr21:17386482-17388045~~chr21:17924411-17926774,
chr21:17600000-17625000~~chr21:17900000-17925000,
chr21:17650000-17675000~~chr21:17900000-17925000,
chr21:17675000-17700000~~chr21:17900000-17925000,
chr21:17675000-17700000~~chr21:17925000-17950000,
chr21:17677615-17680352~~chr21:17923881-17926128,
chr21:17677812-17680265~~chr21:17924313-17926645,
chr21:17677823-17680312~~chr21:17924291-17927223,
chr21:17677849-17680474~~chr21:17924257-17926724,
chr21:17677927-17680289~~chr21:17924240-17926680,
chr21:17678060-17680287~~chr21:17924279-17927173,
chr21:17678109-17680458~~chr21:17924273-17926731,
chr21:17678127-17680159~~chr21:17924472-17926784,
chr21:17678134-17680490~~chr21:17924283-17926719,
chr21:17678148-17680221~~chr21:17924397-17926788,
chr21:17678183-17680160~~chr21:17924495-17926797,
chr21:17678201-17680185~~chr21:17924411-17926774,
chr21:17678230-17680476~~chr21:17924284-17926668,
chr21:17678232-17680291~~chr21:17924273-17926705,
chr21:17678243-17680235~~chr21:17924376-17926721,
chr21:17678249-17680466~~chr21:17924313-17926669,
chr21:17678253-17680475~~chr21:17924113-17926084,
chr21:17678257-17680250~~chr21:17924370-17926081,
chr21:17678261-17680309~~chr21:17924244-17926698,
chr21:17678268-17680024~~chr21:17924382-17926045,
chr21:17678273-17680232~~chr21:17924311-17926659,
chr21:17678274-17680496~~chr21:17924317-17926677,
chr21:17678275-17679993~~chr21:17924375-17926695,
chr21:17678276-17680252~~chr21:17924115-17926703,
chr21:17678299-17680259~~chr21:17924330-17926663,
chr21:17678306-17680047~~chr21:17924232-17925966,
chr21:17678316-17680058~~chr21:17924329-17925933,
chr21:17678318-17680109~~chr21:17924273-17926069,
chr21:17678321-17680260~~chr21:17924254-17926747,
chr21:17678321-17680290~~chr21:17924188-17926114,
chr21:17678360-17680330~~chr21:17924174-17926108,
chr21:17678406-17680047~~chr21:17924235-17926067,
chr21:17678407-17680331~~chr21:17924341-17926046,
chr21:17678440-17680173~~chr21:17924485-17926802,
chr21:17678442-17679985~~chr21:17924612-17926635,
chr21:17678447-17680004~~chr21:17924354-17926683,
chr21:17678473-17680046~~chr21:17924396-17926719,
chr21:17678516-17679996~~chr21:17924566-17926674,
chr21:17688092-17690151~~chr21:17924113-17926084,
chr21:17688212-17690371~~chr21:17924273-17926731,
chr21:17688304-17689964~~chr21:17924311-17926659,
chr21:17700000-17725000~~chr21:17900000-17925000,
chr21:17725000-17750000~~chr21:17900000-17925000,
chr21:17750000-17775000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:17900000-17925000,
chr21:17800000-17825000~~chr21:17900000-17925000,
chr21:17924283-17926719~~chr21:18368377-18371085,
chr21:17924291-17927223~~chr21:18368401-18369908,
chr21:17925000-17950000~~chr21:18025000-18050000,
chr21:17925000-17950000~~chr21:18200000-18225000,
chr21:17925000-17950000~~chr21:18250000-18275000,
chr21:17925000-17950000~~chr21:18275000-18300000,
chr21:17925000-17950000~~chr21:18350000-18375000,
chr21:17925000-17950000~~chr21:18475000-18500000,
chr21:17925000-17950000~~chr21:20875000-20900000,
chr21:17925000-17950000~~chr21:20950000-20975000,