- Basic information
- CohesinDB ID: CDBP00415215
- Locus: chr21-25383848-25387605
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CUTLL1, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 74% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.189
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 76%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, EOMES, NFATC1, GRHL3, HIF1A, XBP1, ARNT, NKX2-1, CTCF
- Target gene symbol (double-evidenced CRMs): ATP5PF,GABPA,ADAMTS1
- Function elements
- Human SNPs: Alcohol_dependence
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 13
- Related genes and loops
- Related gene:
ENSG00000154723,
ENSG00000154727,
ENSG00000154734,
- Related loop:
chr21:18275000-18300000~~chr21:25375000-25400000,
chr21:21000000-21025000~~chr21:25375000-25400000,
chr21:21150000-21175000~~chr21:25375000-25400000,
chr21:22350000-22375000~~chr21:25375000-25400000,
chr21:23125000-23150000~~chr21:25375000-25400000,
chr21:24513423-24515010~~chr21:25384975-25387237,
chr21:24513697-24514874~~chr21:25385247-25387032,
chr21:24550000-24575000~~chr21:25375000-25400000,
chr21:24875000-24900000~~chr21:25375000-25400000,
chr21:24894830-24897390~~chr21:25384467-25387269,
chr21:24894830-24897394~~chr21:25385024-25387052,
chr21:24895217-24897409~~chr21:25384906-25387309,
chr21:24895246-24897306~~chr21:25385187-25387188,
chr21:24895257-24897346~~chr21:25384844-25387316,
chr21:24895401-24897292~~chr21:25385277-25387061,
chr21:24895404-24897444~~chr21:25384540-25387027,
chr21:24895412-24897374~~chr21:25384467-25386981,
chr21:24895417-24897339~~chr21:25385234-25387033,
chr21:24895431-24897366~~chr21:25384794-25387223,
chr21:24895435-24897297~~chr21:25385320-25387052,
chr21:24895436-24897312~~chr21:25385038-25387061,
chr21:24895454-24897362~~chr21:25385185-25387028,
chr21:24895510-24897368~~chr21:25384420-25387034,
chr21:24895582-24897226~~chr21:25384605-25386845,
chr21:24900000-24925000~~chr21:25375000-25400000,
chr21:25025000-25050000~~chr21:25375000-25400000,
chr21:25038878-25040962~~chr21:25384794-25387223,
chr21:25038960-25041269~~chr21:25384420-25387034,
chr21:25050000-25075000~~chr21:25375000-25400000,
chr21:25175000-25200000~~chr21:25375000-25400000,
chr21:25275000-25300000~~chr21:25375000-25400000,
chr21:25282035-25284813~~chr21:25385187-25387188,
chr21:25282774-25284961~~chr21:25384973-25387124,
chr21:25282884-25285002~~chr21:25384844-25387316,
chr21:25282903-25284758~~chr21:25385202-25387023,
chr21:25282928-25284802~~chr21:25384906-25387309,
chr21:25283150-25284658~~chr21:25385262-25387043,
chr21:25349142-25351714~~chr21:25384975-25387237,
chr21:25349194-25351726~~chr21:25385187-25387188,
chr21:25349223-25351193~~chr21:25385202-25387023,
chr21:25349228-25351734~~chr21:25384973-25387124,
chr21:25349249-25351723~~chr21:25385057-25387036,
chr21:25349307-25351726~~chr21:25385207-25387036,
chr21:25349328-25351256~~chr21:25385367-25387046,
chr21:25349357-25351711~~chr21:25384906-25387309,
chr21:25349579-25351235~~chr21:25385229-25387028,
chr21:25375000-25400000~~chr21:25725000-25750000,
chr21:25375000-25400000~~chr21:26825000-26850000,