- Basic information
- CohesinDB ID: CDBP00415217
- Locus: chr21-25395973-25396887
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Data sourse: GSE38395, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE155324, GSE206145, ENCSR000BMY, GSE50893
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Cell type: GM12892, GM2630, SNYDER, GM10847, GM2610, Lymphoblast, GM19240, GM12878, GM12891, GM2588, GM12890, GM19238, hLCL, GM2255, GM19239, GM18486, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.811
- Subunit: NIPBL,SA1,Rad21,SMC1,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX5, XBP1, HDGF, BMI1, NFIC, RUNX3, PRDM1, CBFB, PAX5, MAF, BCLAF1, ZNF217, JUN, TCF12, CTCF, EP300, SND1, DPF2, IRF4, GTF2F1, RBPJ, EED, POU2F2, ZSCAN5D, MTA2, STAT1, SRF, NBN, ARID3A, CHD4, NFKB2, MYC, RAD21, BATF3, STAT3, IKZF1, TERF2, HNRNPH1, ARNTL, STAT5B, CREB1, EZH2, SPI1, GATAD2B, DRAP1, SMARCA5, RELB, RUNX1, SMC1A, AFF4, ZFX, TRIM22, ZNF18, MEF2A, ZBTB2, ARNT, ATF2, FOXM1, ETV6, PBX3, MED1, PML, TERF1, MYB, ZMYM3, STAT5A, BCL11A, NIPBL, SP1, REST, ATF7, ASH2L, TCF3, MLLT1, NFATC3, MEF2B, ZNF207, MTA3, EBF1, CREM, NFATC1, HDAC6, GTF2B, ZBED1, BCL3, YY1, RELA, TARDBP, JUNB, SKIL, HIF1A, BATF, MAX, ZNF143, NR2F1, ZNF687, PKNOX1, TP53, NFKB1, TBX21, BHLHE40, TAF1, EGR1, RNF2, IKZF2, BRD4, JUND, AHR
- Target gene symbol (double-evidenced CRMs): ATP5PF,GABPA,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000154723,
ENSG00000154727,
ENSG00000154734,
- Related loop:
chr21:18275000-18300000~~chr21:25375000-25400000,
chr21:21000000-21025000~~chr21:25375000-25400000,
chr21:21150000-21175000~~chr21:25375000-25400000,
chr21:22350000-22375000~~chr21:25375000-25400000,
chr21:23125000-23150000~~chr21:25375000-25400000,
chr21:24550000-24575000~~chr21:25375000-25400000,
chr21:24875000-24900000~~chr21:25375000-25400000,
chr21:24900000-24925000~~chr21:25375000-25400000,
chr21:25025000-25050000~~chr21:25375000-25400000,
chr21:25050000-25075000~~chr21:25375000-25400000,
chr21:25175000-25200000~~chr21:25375000-25400000,
chr21:25275000-25300000~~chr21:25375000-25400000,
chr21:25375000-25400000~~chr21:25725000-25750000,
chr21:25375000-25400000~~chr21:26825000-26850000,
chr21:25400000-25425000~~chr21:25550000-25575000,
chr21:25400000-25425000~~chr21:25575000-25600000,
chr21:25400000-25425000~~chr21:25600000-25625000,
chr21:25400000-25425000~~chr21:25700000-25725000,
chr21:25400000-25425000~~chr21:25725000-25750000,
chr21:25400000-25425000~~chr21:25775000-25800000,
chr21:25400000-25425000~~chr21:26150000-26175000,