- Basic information
- CohesinDB ID: CDBP00415290
- Locus: chr21-25706599-25710241
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, TC-71, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 67% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.211
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 58%,
"5_TxWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TEAD4, TEAD1
- Target gene symbol (double-evidenced CRMs): MRPL39,JAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 78
- Number of somatic mutations (non-coding): 26
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154721,
- Related loop:
chr21:25100000-25125000~~chr21:25700000-25725000,
chr21:25400000-25425000~~chr21:25700000-25725000,
chr21:25425000-25450000~~chr21:25700000-25725000,
chr21:25450000-25475000~~chr21:25700000-25725000,
chr21:25575000-25600000~~chr21:25700000-25725000,
chr21:25600000-25625000~~chr21:25700000-25725000,
chr21:25606634-25609370~~chr21:25707698-25709437,
chr21:25606701-25609531~~chr21:25707358-25710489,
chr21:25606733-25609495~~chr21:25707675-25710605,
chr21:25606735-25609548~~chr21:25707427-25710615,
chr21:25606746-25609376~~chr21:25707582-25709297,
chr21:25606776-25609578~~chr21:25707372-25710258,
chr21:25606789-25609441~~chr21:25707688-25710567,
chr21:25606790-25609462~~chr21:25707708-25709351,
chr21:25606798-25609451~~chr21:25707713-25709464,
chr21:25606803-25609752~~chr21:25707420-25710495,
chr21:25606809-25609470~~chr21:25707720-25709296,
chr21:25606813-25609482~~chr21:25707421-25709301,
chr21:25606813-25609514~~chr21:25707387-25710588,
chr21:25606813-25609539~~chr21:25707400-25709389,
chr21:25606813-25609564~~chr21:25707391-25709523,
chr21:25606815-25609560~~chr21:25707341-25710526,
chr21:25606816-25609496~~chr21:25707510-25709485,
chr21:25606818-25609406~~chr21:25707731-25709697,
chr21:25606824-25609539~~chr21:25707688-25710613,
chr21:25606830-25609546~~chr21:25707223-25709539,
chr21:25606834-25609470~~chr21:25707558-25709528,
chr21:25606865-25609546~~chr21:25707695-25710621,
chr21:25606869-25609453~~chr21:25707877-25710598,
chr21:25606871-25609531~~chr21:25707660-25710535,
chr21:25606873-25609559~~chr21:25707322-25709495,
chr21:25606880-25609493~~chr21:25707645-25709314,
chr21:25606885-25609476~~chr21:25707878-25709259,
chr21:25606887-25609611~~chr21:25708003-25709470,
chr21:25606894-25609602~~chr21:25708009-25709440,
chr21:25606899-25609820~~chr21:25707427-25709461,
chr21:25606920-25609753~~chr21:25708007-25709432,
chr21:25606927-25609505~~chr21:25708020-25709433,
chr21:25606943-25609746~~chr21:25708004-25709487,
chr21:25606945-25609755~~chr21:25708023-25709409,
chr21:25606952-25609468~~chr21:25707804-25709308,
chr21:25606963-25609577~~chr21:25707939-25710591,
chr21:25606981-25609372~~chr21:25707950-25709246,
chr21:25606981-25609574~~chr21:25707674-25709566,
chr21:25607045-25609461~~chr21:25707835-25709504,
chr21:25607052-25609346~~chr21:25707738-25709299,
chr21:25707427-25710615~~chr21:25800672-25802523,
chr21:25707695-25710621~~chr21:25800757-25802438,