- Basic information
- CohesinDB ID: CDBP00415305
- Locus: chr21-25795113-25795355
-
Data sourse: GSE67783
-
Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 72%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): CYYR1,JAM2,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000154721,
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:25400000-25425000~~chr21:25775000-25800000,
chr21:25600000-25625000~~chr21:25800000-25825000,
chr21:25625000-25650000~~chr21:25775000-25800000,
chr21:25775000-25800000~~chr21:25950000-25975000,
chr21:25775000-25800000~~chr21:26150000-26175000,
chr21:25775000-25800000~~chr21:26375000-26400000,
chr21:25775000-25800000~~chr21:26525000-26550000,
chr21:25775000-25800000~~chr21:26675000-26700000,
chr21:25775000-25800000~~chr21:26700000-26725000,
chr21:25775000-25800000~~chr21:26800000-26825000,
chr21:25789414-25791324~~chr21:26715348-26718310,
chr21:25789469-25791355~~chr21:25861621-25863550,
chr21:25789469-25791355~~chr21:26715196-26718405,
chr21:25789485-25791180~~chr21:26715356-26718205,
chr21:25789502-25791503~~chr21:26168596-26171705,
chr21:25789502-25791503~~chr21:26715239-26718238,
chr21:25789503-25791490~~chr21:26715252-26718261,
chr21:25789504-25791193~~chr21:26715280-26718256,
chr21:25789550-25791386~~chr21:25861500-25863573,
chr21:25789567-25791545~~chr21:26168542-26171800,
chr21:25789567-25791545~~chr21:26715396-26718303,
chr21:25789570-25791547~~chr21:25861792-25863529,