- Basic information
- CohesinDB ID: CDBP00415314
- Locus: chr21-25833846-25834090
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Data sourse: GSE111913, GSE86191
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Cell type: RT-112, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 45%,
"9_Het": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, ZSCAN5D, ZNF263, MYCN, ZFX, TEAD4, WT1, FOXA1, KDM1A, HOXC5, RELA, JUNB, GATA4, PBX4, STAT3, TP63, FOS, SMARCB1, ARNTL, NR3C1, CEBPB, KLF5, TRIM28, SNAI2, ESR1, SETDB1, JUN, CTCF, AR, GATA6, SMC3
- Target gene symbol (double-evidenced CRMs): MRPL39,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops