- Basic information
- CohesinDB ID: CDBP00415316
- Locus: chr21-25837509-25838288
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Data sourse: GSE206145
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Cell type: RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 57%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SMARCA2, MYCN, ZNF317, DUX4, FOXA1, FOXF1, SRF, HOXB13, TWIST1, SMARCC1, YY1, ZNF384, JUNB, RUNX2, NFIC, MYC, ZNF362, SMARCA4, RAD21, ZFP64, PBX4, HIF1A, CHD7, RXRA, ARNT, GATA3, STAT3, PBX3, FOS, MED1, ZNF750, NR3C1, CEBPB, MYB, ETV1, ESR1, GRHL2, EBF3, ZNF22, JUN, TCF12, MAFK, CTCF, EP300, LMO1, AR, ZBTB20, PAX8, FLI1, BRD4, JUND, MRTFB, TEAD4, RBPJ
- Target gene symbol (double-evidenced CRMs): MRPL39,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops