- Basic information
- CohesinDB ID: CDBP00415317
- Locus: chr21-25838795-25839584
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Data sourse: GSE206145, ENCSR000BTU, GSE116344
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Cell type: RPE, Ishikawa, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CEBPA, NFATC1, ZFX, XBP1, DUX4, FOXA1, BCL3, HOXC5, YY1, RELA, JUNB, NFIC, RUNX2, SMARCA4, RAD21, NRF1, PBX4, DAXX, GRHL3, NKX2-1, STAT3, FOS, MITF, ARNTL, NR3C1, CEBPB, TRIM28, ETV1, ESR1, SETDB1, USF2, JUN, TCF12, USF1, EP300, AR, GATA2, POU2F3, BRD4, TEAD4
- Target gene symbol (double-evidenced CRMs): CYYR1,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops