- Basic information
- CohesinDB ID: CDBP00415355
- Locus: chr21-25952178-25952242
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 65%,
"4_Tx": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, SOX2, NME2, XBP1, FOXA1, MLL4, TFAP4, ATF3, ZSCAN4, TP63, ZNF736, CDX2, TEAD1, ZNF573, KLF6, SNAI2, ESR1, HNF1B, OCA2, MLL, JUN, CTCF, SMC1, TEAD4, PDX1, CHD8, TOP2A, ZNF317, DUX4, ERG, HOXC5, MYC, SMARCA4, RAD21, LHX2, GRHL3, PROX1, STAT3, NR3C1, CEBPB, CREB1, GRHL2, SPI1, IRF1, GATA2, ZNF766, RUNX1, CTNNB1, SMC1A, LDB1, SMAD3, ZNF384, RUNX2, PBX4, ARNT, DAXX, PBX3, FOS, CDK8, MED1, ZEB1, CEBPD, MYB, NCOA1, RBM22, USF1, BCL11A, NIPBL, SP1, ZNF605, FOXP1, FOXA2, CBX3, PAF1, GTF2B, HOXB13, ZNF19, RELA, YY1, JUNB, GATA3, TAL1, MAX, ZNF143, AGO2, KLF4, TCF7L2, TP53, PKNOX1, PHOX2B, ELF3, AR, PAX3-FOXO1, NOTCH3, BRD4, JUND, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): APP,CYYR1,GABPA
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154727,
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:25750000-25775000~~chr21:25950000-25975000,
chr21:25775000-25800000~~chr21:25950000-25975000,
chr21:25925000-25950000~~chr21:26150000-26175000,
chr21:25925000-25950000~~chr21:27600000-27625000,
chr21:25934208-25935715~~chr21:25953103-25954588,
chr21:25950000-25975000~~chr21:26050000-26075000,
chr21:25950000-25975000~~chr21:26075000-26100000,
chr21:25950000-25975000~~chr21:26125000-26150000,
chr21:25950000-25975000~~chr21:26150000-26175000,
chr21:25950000-25975000~~chr21:26250000-26275000,
chr21:25950000-25975000~~chr21:26375000-26400000,
chr21:25950000-25975000~~chr21:26525000-26550000,
chr21:25950000-25975000~~chr21:26800000-26825000,