- Basic information
- CohesinDB ID: CDBP00415499
- Locus: chr21-26470936-26471471
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 69%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, PGR, CHD8, POU2F2, FOXA2, NKX2-2, POU5F1, STAG2, MAFF, STAT1, MLLT3, MEF2C, CDK9, KDM1A, HOXC5, RELA, ERG, CREBBP, JUNB, ATF3, MYC, RUNX2, AHR, RAD21, LHX2, PBX4, NKX2-1, STAT3, MAX, MAFB, TP63, FOS, CDK8, NKX3-1, RCOR1, MAF1, MED1, ZNF750, CEBPB, KLF4, TRIM28, KMT2A, MYB, OCA2, NFKB1, STAT5A, CTCF, JUN, MAFK, SPI1, AR, INTS13, TRIM24, FLI1, BRD4, JUND, MRTFB, KMT2B, PDX1, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): GABPA,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 4
- Related genes and loops