- Basic information
- CohesinDB ID: CDBP00415500
- Locus: chr21-26489802-26491360
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Data sourse: ENCSR000BLD, ENCSR000BTU, GSE110061, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, GSE206145, GSE121355, GSE116344, GSE97394
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, RH4, Ishikawa, H9-hESC, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: NIPBL,SA1,Rad21,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 59%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB2, CHD8, FOXA2, TRIM28, RAD21, SMC3, SRF, BAHD1, CTCF
- Target gene symbol (double-evidenced CRMs): MRPL39,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 42
- Number of somatic mutations (non-coding): 0
- Related genes and loops