- Basic information
- CohesinDB ID: CDBP00415547
- Locus: chr21-26747114-26747560
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Data sourse: GSE116344
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Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: VDR, ARNT, DUX4, PAX5, HOXB13
- Target gene symbol (double-evidenced CRMs): ADAMTS1,MRPL39
- Function elements
- Human SNPs: Protein_quantitative_trait_loci_(liver)
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154734,
- Related loop:
chr21:25600000-25625000~~chr21:26725000-26750000,
chr21:25825000-25850000~~chr21:26725000-26750000,
chr21:26725000-26750000~~chr21:26825000-26850000,
chr21:26725000-26750000~~chr21:28025000-28050000,
chr21:26725000-26750000~~chr21:28725000-28750000,
chr21:26750000-26775000~~chr21:26950000-26975000,
chr21:26750000-26775000~~chr21:27700000-27725000,
chr21:26750000-26775000~~chr21:28025000-28050000,
chr21:26750000-26775000~~chr21:28325000-28350000,
chr21:26750000-26775000~~chr21:28725000-28750000,
chr21:26750000-26775000~~chr21:28925000-28950000,