- Basic information
- CohesinDB ID: CDBP00415568
- Locus: chr21-26814123-26815116
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Data sourse: GSE138405, GSE206145-NatGen2015, ENCSR000EDE, GSE116344, GSE126990, GSE108869, ENCSR000ECS, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, RH4, HeLa-S3, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SMC3,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 81%,
"5_TxWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, ZNF391, ZSCAN5C, SOX2, NME2, XBP1, FOXA1, SUZ12, ZNF274, NFIC, CTCFL, ZBTB44, CHD7, ZNF444, ZSCAN4, TRIM28, SNAI2, ESR1, ZNF561, CTCF, JUN, EP300, BAF155, PAX8, ZNF410, ZNF528, SMC1, TEAD4, PDX1, GLIS1, NANOG, POU5F1, MYCN, RUNX1T1, ZSCAN21, ZSCAN5A, STAT1, SRF, DDX5, ERG, MYC, SMARCA4, RFX1, TSHZ1, RAD21, ZNF2, GRHL3, RXRA, NKX2-1, GABPA, STAT3, UBN1, NKX3-1, NFE2, ZNF639, NR3C1, CEBPB, CREB1, KLF8, ZHX2, ZNF664, GATA2, FLI1, MRTFB, SMC1A, CBX1, NKX2-2, SMAD3, REPIN1, ZFP37, ZNF770, ZNF654, TRIM22, SMARCC1, ZNF18, PRDM10, ZBTB2, ZNF35, GATA4, OSR2, PBX4, NRF1, ZEB2, MAFB, ZNF10, MED1, ZEB1, ZXDB, SCRT2, PIAS1, NUP98-HOXA9, SP1, HNF4A, REST, ZHX1, HOXA9, PHIP, FOXP1, PRDM6, SMC3, ZNF34, STAG1, FOXA2, SS18, ZNF692, ZSCAN16, MAFF, FOXF1, HOXB13, KDM1A, YY1, NEUROD1, BRG1, HIF1A, OTX2, MAX, TLE3, KLF4, BCL11B, SP7, TP53, ZNF334, PHOX2B, T, BRD2, AR, ZNF324, EGLN2, ZBTB42, ZNF280D, HSF1, NCOR1, BRD4, SCRT1, ZSCAN23, BRCA1
- Target gene symbol (double-evidenced CRMs): GABPA,APP,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000154727,
ENSG00000142192,
- Related loop:
chr21:25300000-25325000~~chr21:26800000-26825000,
chr21:25575000-25600000~~chr21:26800000-26825000,
chr21:25775000-25800000~~chr21:26800000-26825000,
chr21:25950000-25975000~~chr21:26800000-26825000,
chr21:26150000-26175000~~chr21:26800000-26825000,
chr21:26375000-26400000~~chr21:26800000-26825000,
chr21:26800000-26825000~~chr21:28225000-28250000,
chr21:26800000-26825000~~chr21:28725000-28750000,
chr21:26800000-26825000~~chr21:28950000-28975000,
chr21:26815238-26816923~~chr21:27700282-27702347,