- Basic information
- CohesinDB ID: CDBP00415607
- Locus: chr21-26961136-26968924
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, GSE126634, GSE116868, ENCSR000EGW, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE111537, GSE131606, GSE108869, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE165895, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE152721, GSE135093, GSE206145-NatGen2015, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, GSE116344, GSE106870, GSE138105, GSE145327, GSE118494, GSE98367, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000ECE, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR000HPG, GSE38411, ENCSR000EDE, GSE83726, GSE126990, ENCSR000ECS, GSE64758, GSE131577
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Cell type: RH4, SLK, CVB-hiPSC, CVI-hiPSC, Liver, H9-hESC, RPE, Fibroblast, Ishikawa, HeLa-S3, IMR-90, BCBL-1, K-562, HFFc6, DKO, H1-hESC, Monocytes, MB157, SK-N-SH, HeLa-Tet-On, HAP1, Macrophage, HUES64, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, Neurons-H1, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 28% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.644
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"1_TssA": 13%,
"13_ReprPC": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SMARCA2, NME2, XBP1, FOXA1, CHD7, MORC2, HDAC3, MYOG, TEAD1, ETV1, OCA2, CTCF, MNT, GATA6, TEAD4, KMT2B, PDX1, TFAP2C, POU2F2, NANOG, MYCN, POU5F1, TOP2A, DUX4, BAHD1, ERG, MYC, SMARCA4, RAD21, GRHL3, GABPA, STAT3, NKX3-1, ARNTL, NR3C1, CEBPB, CREB1, EZH2, SPI1, GATA2, SIX2, FLI1, MYF5, RUNX1, ZNF534, SMARCC1, ZNF384, GATA4, GR, ARNT, SOX11, ATF2, MAFB, CDK8, MED1, MYB, MAFK, REST, HOXA9, FOXP1, PAX7, FOXA2, SS18, FOXF1, MEF2C, HOXB13, RELA, NEUROD1, ISL1, HIF1A, OTX2, GATA3, MAX, HAND2, NEUROG2, TCF7L2, ZNF334, MYOD1, PHOX2B, PAX3-FOXO1, AR, EGLN2, NOTCH3, BRD4, JUND, TBX2, AHR
- Target gene symbol (double-evidenced CRMs): ADAMTS5,ADAMTS1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 401
- Number of somatic mutations (non-coding): 37
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000154736,
ENSG00000225298,
- Related loop:
chr21:26750000-26775000~~chr21:26950000-26975000,
chr21:26850000-26875000~~chr21:26950000-26975000,
chr21:26880942-26882759~~chr21:26960974-26962592,
chr21:26950000-26975000~~chr21:27200000-27225000,
chr21:26950000-26975000~~chr21:27350000-27375000,
chr21:26950000-26975000~~chr21:27450000-27475000,
chr21:26950000-26975000~~chr21:27550000-27575000,
chr21:26950000-26975000~~chr21:27675000-27700000,
chr21:26950000-26975000~~chr21:27700000-27725000,
chr21:26950000-26975000~~chr21:28325000-28350000,
chr21:26950000-26975000~~chr21:28725000-28750000,
chr21:26950000-26975000~~chr21:28750000-28775000,
chr21:26963690-26966148~~chr21:27475507-27477823,
chr21:26963690-26966148~~chr21:27563536-27566212,
chr21:26963690-26966148~~chr21:27699551-27702135,
chr21:26964017-26968392~~chr21:27474660-27477802,
chr21:26964017-26968392~~chr21:27699511-27702311,
chr21:26964890-26966428~~chr21:27212930-27214316,
chr21:26964959-26966539~~chr21:27212783-27214490,
chr21:26965332-26968340~~chr21:27212947-27214217,
chr21:26965332-26968340~~chr21:27699963-27702208,
chr21:26966496-26968374~~chr21:27475507-27477823,