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Basic information

CohesinDB ID: CDBP00415664

Locus: chr21-27212161-27212411

Data sourse: GSE206145

Cell type: RPE, HEK293T

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Mau2,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 39% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 92%, "5_TxWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: GATA3, CEBPB, GATA2

Target gene symbol (double-evidenced CRMs): LINC00113,ADAMTS5,ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000154734, ENSG00000154736, ENSG00000225298,

Tools:

Assay

refGene

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Cohesin site CDBP00415664

CDBP00415664 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00415664

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