- Basic information
- CohesinDB ID: CDBP00415751
- Locus: chr21-27555979-27556487
-
Data sourse: GSE206145-NatGen2015
-
Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 82%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, PGR, BRD3, FOXA1, BAHD1, RELA, RUNX2, LHX2, ARNT, GATA3, STAT3, PAX5, MED1, NR3C1, CEBPB, CREB1, PIAS1, OCA2, SETDB1, MYOD1, AR, GATA2, BRD4, FOXP1, ZNF92
- Target gene symbol (double-evidenced CRMs): LINC00113,LTN1,ADAMTS1,ADAMTS5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000154736,
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:26825000-26850000~~chr21:27550000-27575000,
chr21:26850000-26875000~~chr21:27550000-27575000,
chr21:26875000-26900000~~chr21:27550000-27575000,
chr21:26900000-26925000~~chr21:27550000-27575000,
chr21:26925000-26950000~~chr21:27550000-27575000,
chr21:26950000-26975000~~chr21:27550000-27575000,
chr21:26975000-27000000~~chr21:27550000-27575000,
chr21:27025000-27050000~~chr21:27550000-27575000,
chr21:27050000-27075000~~chr21:27550000-27575000,
chr21:27075000-27100000~~chr21:27550000-27575000,
chr21:27100000-27125000~~chr21:27550000-27575000,
chr21:27200000-27225000~~chr21:27550000-27575000,
chr21:27225000-27250000~~chr21:27550000-27575000,
chr21:27250000-27275000~~chr21:27550000-27575000,
chr21:27300000-27325000~~chr21:27550000-27575000,
chr21:27325000-27350000~~chr21:27550000-27575000,
chr21:27350000-27375000~~chr21:27550000-27575000,
chr21:27375000-27400000~~chr21:27550000-27575000,
chr21:27450000-27475000~~chr21:27550000-27575000,
chr21:27550000-27575000~~chr21:27675000-27700000,
chr21:27550000-27575000~~chr21:27700000-27725000,
chr21:27550000-27575000~~chr21:28025000-28050000,
chr21:27550000-27575000~~chr21:28050000-28075000,
chr21:27550000-27575000~~chr21:28225000-28250000,
chr21:27550000-27575000~~chr21:28325000-28350000,
chr21:27550000-27575000~~chr21:28375000-28400000,
chr21:27550000-27575000~~chr21:28425000-28450000,
chr21:27550000-27575000~~chr21:28525000-28550000,
chr21:27550000-27575000~~chr21:28725000-28750000,
chr21:27550000-27575000~~chr21:28925000-28950000,