- Basic information
- CohesinDB ID: CDBP00415759
- Locus: chr21-27589180-27591051
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Data sourse: GSE206145-NatGen2015, GSE68388, GSE111537, GSE94872, ENCSR917QNE
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Cell type: Fibroblast, HUVEC, Liver, OCI-AML-3, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 75%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, FOSL1, PGR, PPARG, CEBPA, EZH2phosphoT487, RUNX1T1, ZFX, SMAD3, FOXA1, CDK9, TFAP4, ERG, RELA, KDM1A, RUNX2, MYC, CHD7, RAD21, GRHL3, HIF1A, ARNT, RXRA, STAT3, TAL1, FOS, CDK8, MED1, KLF4, ZFP69B, CEBPB, JMJD1C, NR2F2, TEAD1, MYB, KLF6, ETV1, ELF1, LMO2, TP53, HNF1B, ESR1, MYOD1, STAT5A, PHOX2B, JUN, ELF3, ZHX2, SPI1, TCF12, SP1, NR4A1, AR, IRF1, BCL11A, GATA2, REST, FLI1, BRD4, TCF3, E2F1, AHR
- Target gene symbol (double-evidenced CRMs): ADAMTS5,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 20
- Related genes and loops