- Basic information
- CohesinDB ID: CDBP00415771
- Locus: chr21-27679599-27679830
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, ZSCAN5D, MYCN, SS18, ZFX, FOXA1, CDK9, HOXB13, ERG, RELA, CREBBP, MYC, RUNX2, BRG1, LHX2, GRHL3, SP140, OTX2, GABPA, PAX5, TP63, NKX3-1, HDAC3, ARNTL, TLE3, NR3C1, CEBPB, ETV1, PIAS1, CREB1, EZH2, LMO2, ESR1, TP53, ZNF680, GRHL2, JUN, BAF155, AR, HDAC2, GATA2, ARID1A, ASH2L, BRD4, FOXP1, MAZ, HCFC1R1, SMC3
- Target gene symbol (double-evidenced CRMs): ADAMTS5,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000154736,
- Related loop:
chr21:26825000-26850000~~chr21:27675000-27700000,
chr21:26848655-26851362~~chr21:27673391-27674734,
chr21:26850000-26875000~~chr21:27650000-27675000,
chr21:26850000-26875000~~chr21:27675000-27700000,
chr21:26875000-26900000~~chr21:27675000-27700000,
chr21:26950000-26975000~~chr21:27675000-27700000,
chr21:27025000-27050000~~chr21:27675000-27700000,
chr21:27050000-27075000~~chr21:27675000-27700000,
chr21:27200000-27225000~~chr21:27675000-27700000,
chr21:27225000-27250000~~chr21:27675000-27700000,
chr21:27250000-27275000~~chr21:27675000-27700000,
chr21:27300000-27325000~~chr21:27675000-27700000,
chr21:27350000-27375000~~chr21:27675000-27700000,
chr21:27375000-27400000~~chr21:27675000-27700000,
chr21:27450000-27475000~~chr21:27675000-27700000,
chr21:27550000-27575000~~chr21:27675000-27700000,
chr21:27675000-27700000~~chr21:28325000-28350000,
chr21:27675000-27700000~~chr21:28725000-28750000,