Browse_each

Basic information

CohesinDB ID: CDBP00415773

Locus: chr21-27691546-27691856

Data sourse: GSE206145-NatGen2015

Cell type: Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Mau2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 36% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 91%, "5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NANOG, FOXA2, LDB1, SOX2, RAD21, GRHL3, GATA3, PHOX2B

Target gene symbol (double-evidenced CRMs): ADAMTS5,ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000154734, ENSG00000154736,

Tools:

Assay

refGene

1 item too small - zoom in to view.(Dismiss)

Ruler

Cohesin site CDBP00415773

CDBP00415773 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00415773

Current terms

Suggested terms

Custom term