- Basic information
- CohesinDB ID: CDBP00415776
- Locus: chr21-27696845-27697019
-
Data sourse: GSE116344, GSE206145-NatGen2015
-
Cell type: Fibroblast, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CREBBP, GRHL3
- Target gene symbol (double-evidenced CRMs): ADAMTS5,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000154736,
- Related loop:
chr21:25600000-25625000~~chr21:27700000-27725000,
chr21:26715447-26718081~~chr21:27700496-27701861,
chr21:26731692-26733752~~chr21:27700028-27702259,
chr21:26731919-26733557~~chr21:27700284-27702122,
chr21:26750000-26775000~~chr21:27700000-27725000,
chr21:26768475-26770735~~chr21:27700023-27702186,
chr21:26768631-26771060~~chr21:27700355-27702199,
chr21:26768665-26770424~~chr21:27699913-27702170,
chr21:26768979-26770511~~chr21:27700287-27702114,
chr21:26769208-26770436~~chr21:27700042-27701914,
chr21:26769270-26770477~~chr21:27700358-27702051,
chr21:26815238-26816923~~chr21:27700282-27702347,
chr21:26825000-26850000~~chr21:27675000-27700000,
chr21:26825000-26850000~~chr21:27700000-27725000,
chr21:26833453-26834965~~chr21:27700355-27702199,
chr21:26848648-26851445~~chr21:27700287-27702114,
chr21:26848655-26851362~~chr21:27700015-27702372,
chr21:26848657-26851571~~chr21:27700129-27702131,
chr21:26848663-26851399~~chr21:27700279-27702131,
chr21:26848676-26851554~~chr21:27700282-27702347,
chr21:26848685-26851208~~chr21:27700325-27702096,
chr21:26848686-26851632~~chr21:27699551-27702135,
chr21:26848688-26851432~~chr21:27700355-27702199,
chr21:26848701-26852142~~chr21:27699511-27702311,
chr21:26848717-26851115~~chr21:27700284-27702122,
chr21:26848717-26851211~~chr21:27700526-27702055,
chr21:26848718-26851536~~chr21:27700320-27702132,
chr21:26848727-26851343~~chr21:27700565-27702018,
chr21:26848729-26851350~~chr21:27700318-27702132,
chr21:26848733-26851211~~chr21:27700246-27702059,
chr21:26848735-26851318~~chr21:27700350-27702114,
chr21:26848735-26852148~~chr21:27700351-27702121,
chr21:26848739-26851655~~chr21:27700076-27702211,
chr21:26848745-26851720~~chr21:27700358-27702051,
chr21:26848748-26851651~~chr21:27699952-27702148,
chr21:26848749-26851118~~chr21:27700496-27701999,
chr21:26848750-26851648~~chr21:27700517-27702048,
chr21:26848751-26851646~~chr21:27700023-27702186,
chr21:26848757-26851632~~chr21:27700291-27702152,
chr21:26848761-26852116~~chr21:27700300-27702127,
chr21:26848763-26851113~~chr21:27700525-27701999,
chr21:26848765-26851527~~chr21:27699929-27702131,
chr21:26848770-26851390~~chr21:27699952-27702098,
chr21:26848785-26851026~~chr21:27700507-27702020,
chr21:26848803-26851219~~chr21:27700394-27702179,
chr21:26848804-26851538~~chr21:27700287-27702107,
chr21:26848830-26851638~~chr21:27700281-27702128,
chr21:26848834-26851460~~chr21:27700290-27702123,
chr21:26848856-26851244~~chr21:27700305-27702116,
chr21:26848864-26851333~~chr21:27700333-27701995,
chr21:26848867-26851805~~chr21:27700506-27702101,
chr21:26848882-26851252~~chr21:27700303-27702035,
chr21:26848931-26851381~~chr21:27700288-27701996,
chr21:26848935-26851041~~chr21:27700220-27701917,
chr21:26848935-26851073~~chr21:27700474-27701901,
chr21:26848936-26851071~~chr21:27700526-27701775,
chr21:26848936-26851075~~chr21:27700042-27701914,
chr21:26848947-26851347~~chr21:27700028-27702259,
chr21:26848955-26851551~~chr21:27699963-27702208,
chr21:26848956-26852143~~chr21:27700277-27702128,
chr21:26848960-26851060~~chr21:27700563-27701854,
chr21:26849043-26851569~~chr21:27700335-27702088,
chr21:26849049-26852110~~chr21:27699913-27702170,
chr21:26849232-26851602~~chr21:27700517-27701777,
chr21:26849251-26851658~~chr21:27699991-27702131,
chr21:26849441-26851499~~chr21:27700289-27702138,
chr21:26849452-26851114~~chr21:27700473-27702088,
chr21:26849486-26851137~~chr21:27700482-27702087,
chr21:26849487-26851382~~chr21:27700376-27702045,
chr21:26849494-26851554~~chr21:27700337-27702131,
chr21:26849499-26851723~~chr21:27700510-27702123,
chr21:26850000-26875000~~chr21:27675000-27700000,
chr21:26850000-26875000~~chr21:27700000-27725000,
chr21:26875000-26900000~~chr21:27675000-27700000,
chr21:26880663-26882691~~chr21:27700355-27702199,
chr21:26880679-26882832~~chr21:27699929-27702131,
chr21:26880733-26882858~~chr21:27699551-27702135,
chr21:26880869-26882702~~chr21:27700318-27702132,
chr21:26880905-26882638~~chr21:27700358-27702051,
chr21:26880923-26882670~~chr21:27700028-27702259,
chr21:26880999-26882442~~chr21:27700129-27702131,
chr21:26909307-26910994~~chr21:27700506-27702101,
chr21:26950000-26975000~~chr21:27675000-27700000,
chr21:26950000-26975000~~chr21:27700000-27725000,
chr21:26963690-26966148~~chr21:27699551-27702135,
chr21:26964017-26968392~~chr21:27699511-27702311,
chr21:26965332-26968340~~chr21:27699963-27702208,
chr21:27025000-27050000~~chr21:27675000-27700000,
chr21:27025000-27050000~~chr21:27700000-27725000,
chr21:27050000-27075000~~chr21:27675000-27700000,
chr21:27200000-27225000~~chr21:27675000-27700000,
chr21:27200000-27225000~~chr21:27700000-27725000,
chr21:27225000-27250000~~chr21:27675000-27700000,
chr21:27250000-27275000~~chr21:27675000-27700000,
chr21:27300000-27325000~~chr21:27675000-27700000,
chr21:27300000-27325000~~chr21:27700000-27725000,
chr21:27350000-27375000~~chr21:27675000-27700000,
chr21:27375000-27400000~~chr21:27675000-27700000,
chr21:27450000-27475000~~chr21:27675000-27700000,
chr21:27550000-27575000~~chr21:27675000-27700000,
chr21:27550000-27575000~~chr21:27700000-27725000,
chr21:27564022-27565753~~chr21:27699929-27702131,
chr21:27675000-27700000~~chr21:28325000-28350000,
chr21:27675000-27700000~~chr21:28725000-28750000,
chr21:27699511-27702311~~chr21:28334487-28338171,
chr21:27699913-27702170~~chr21:28051110-28052908,
chr21:27699913-27702170~~chr21:28333968-28338137,
chr21:27699929-27702131~~chr21:28335562-28338194,
chr21:27699952-27702148~~chr21:28050939-28053207,
chr21:27699952-27702148~~chr21:28335622-28338264,
chr21:27699963-27702208~~chr21:28050939-28052956,
chr21:27700000-27725000~~chr21:28025000-28050000,
chr21:27700000-27725000~~chr21:28050000-28075000,
chr21:27700000-27725000~~chr21:28325000-28350000,
chr21:27700000-27725000~~chr21:28500000-28525000,
chr21:27700000-27725000~~chr21:28725000-28750000,
chr21:27700000-27725000~~chr21:28925000-28950000,
chr21:27700023-27702186~~chr21:28335622-28338100,
chr21:27700279-27702131~~chr21:28335654-28338236,
chr21:27700281-27702128~~chr21:28335610-28338190,
chr21:27700282-27702347~~chr21:28051033-28052927,
chr21:27700287-27702114~~chr21:28050094-28052904,
chr21:27700291-27702152~~chr21:28335560-28338076,
chr21:27700318-27702132~~chr21:28334564-28338188,
chr21:27700325-27702096~~chr21:28051197-28052726,
chr21:27700355-27702199~~chr21:28051112-28052927,
chr21:27700355-27702199~~chr21:28335663-28338245,
chr21:27700525-27701999~~chr21:28335697-28338238,