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Basic information

CohesinDB ID: CDBP00415778

Locus: chr21-27719405-27719658

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 36% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 95%, "9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, ARNTL, ZNF750, CDK6, TRIM28, POU5F1, SCRT2, ZFX, TEAD4, XBP1, HIF1A, BRD4, SCRT1, MAX, CTCF, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): ADAMTS1,LTN1,ADAMTS5,LINC00113

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 5

Related genes and loops

Related gene: ENSG00000154734, ENSG00000154736, ENSG00000225298, ENSG00000198862,

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Deatailed information for cohesin site CDBP00415778