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Basic information

CohesinDB ID: CDBP00415950

Locus: chr21-28426062-28428543

Data sourse: GSE206145, GSE206145-NatGen2015, ENCSR000BLY, GSE165895

Cell type: RPE, Fibroblast, SK-N-SH, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 36% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 66%, "5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, RELA, POU2F2, TRIM28, BRD4, ZNF334, ZNF143

Target gene symbol (double-evidenced CRMs): ADAMTS1,CYYR1,LINC00113

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 12

Related genes and loops

Related gene: ENSG00000166265, ENSG00000154734, ENSG00000225298,

eachgene

Deatailed information for cohesin site CDBP00415950