- Basic information
- CohesinDB ID: CDBP00415952
- Locus: chr21-28435933-28437451
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Data sourse: ENCSR000BLY, GSE85526, GSE206145-NatGen2015, GSE68388, GSE108869, GSE165895
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Cell type: Fibroblast, HEKn, HeLa-S3, SK-N-SH, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 68%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, FOXA1, TFAP4, NFIC, CHD7, MITF, ZNF573, ETV1, ESR1, MED26, JUN, TCF12, BAF155, EP300, TEAD4, PDX1, NANOG, MYCN, BRD3, TOP2A, ERF, DUX4, HNF4G, ERG, HOXC5, ASCL1, MYC, RAD21, GRHL3, RXRA, GABPA, STAT3, NKX3-1, RCOR1, ARNTL, NR3C1, CEBPB, CREB1, EZH2, GRHL2, EBF3, ZHX2, EHF, HDAC2, GATA2, MXI1, RUNX1, SMC1A, SIN3A, SMAD3, SMARCC1, ZNF384, RUNX2, GATA4, GR, PBX4, DAXX, NRF1, ARNT, ATF2, PRDM9, PBX3, CHD1, FOS, MED1, PIAS1, MAFK, HNF4A, REST, ARID1A, ATF7, ASH2L, FOXP1, ZNF283, PPARG, FOXA2, ZSCAN16, ESR2, FOXF1, HOXB13, YY1, RELA, JUNB, BRG1, ISL1, HIF1A, OTX2, GATA3, TAL1, MAX, HAND2, TLE3, NCOA3, TCF7L2, NEUROG2, MYOD1, PHOX2B, ELF3, BRD2, BHLHE40, AR, BRD4, JUND, SCRT1, ZNF440, TBX2, FOSL2
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LINC00113,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops
- Related gene:
ENSG00000166265,
ENSG00000154734,
ENSG00000225298,
- Related loop:
chr21:25350000-25375000~~chr21:28425000-28450000,
chr21:26075000-26100000~~chr21:28425000-28450000,
chr21:26525000-26550000~~chr21:28425000-28450000,
chr21:26825000-26850000~~chr21:28425000-28450000,
chr21:27100000-27125000~~chr21:28425000-28450000,
chr21:27325000-27350000~~chr21:28425000-28450000,
chr21:27550000-27575000~~chr21:28425000-28450000,
chr21:27600000-27625000~~chr21:28425000-28450000,
chr21:27750000-27775000~~chr21:28425000-28450000,
chr21:28100000-28125000~~chr21:28425000-28450000,
chr21:28125000-28150000~~chr21:28425000-28450000,
chr21:28225000-28250000~~chr21:28425000-28450000,
chr21:28325000-28350000~~chr21:28425000-28450000,
chr21:28425000-28450000~~chr21:28625000-28650000,
chr21:28425000-28450000~~chr21:28700000-28725000,
chr21:28425000-28450000~~chr21:28725000-28750000,