Browse_each

Basic information

CohesinDB ID: CDBP00415954

Locus: chr21-28441650-28446617

Data sourse: ENCSR000EFJ, GSE98367, ENCSR000HPG, GSE206145, GSE206145-NatGen2015, GSE120943, GSE165895

Cell type: RPE, Fibroblast, Monocytes, IMR-90, Macrophage, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 5% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.933

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: TES,Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 36% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 64%, "7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CDK6, RUNX2

Target gene symbol (double-evidenced CRMs): LINC00113,CYYR1,ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 17

Related genes and loops

Related gene: ENSG00000166265, ENSG00000154734, ENSG00000225298,

eachgene

Deatailed information for cohesin site CDBP00415954