- Basic information
- CohesinDB ID: CDBP00416028
- Locus: chr21-28754026-28755278
-
Data sourse: ENCSR000EFJ, GSE115250, ENCSR000HPG, ENCSR917QNE, GSE206145-NatGen2015, GSE165895
-
Cell type: Fibroblast, IMR-90, Liver, TC-32, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,SMC3,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 58%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, PGR, SMARCA2, SOX2, XBP1, FOXA1, NFIC, CHD7, MITF, MAF, TEAD1, ELF1, TRIM28, ETV1, NFE2L2, ESR1, OCA2, CTCF, JUN, TCF12, BAF155, EP300, SOX5, GATA6, DPF2, ZNF302, PAX8, TEAD4, TFAP2C, POU2F2, CHD8, NANOG, ZSCAN5D, MYCN, POU5F1, ZNF317, ZNF300, ERG, HNF4G, MYC, EZH1, SMARCA4, RAD21, RXRA, GABPA, STAT3, RCOR1, ARNTL, NR3C1, CEBPB, CREB1, GRHL2, GATA2, FLI1, MXI1, NCOA2, ZIM3, SMC1A, CEBPA, CRY1, SIN3A, ZFX, SMARCC1, TWIST1, MEF2A, CREBBP, ZNF133, RUNX2, GATA4, PBX4, HMGB2, PRDM9, PBX3, FOXM1, MAFB, FOS, MED1, SCRT2, PIAS1, C11orf30, TBX5, STAT5A, MAFK, SP1, HNF4A, NKX2-5, SMC3, HMGB1, PPARG, FOXA2, ZNF316, MAFF, FOXF1, ZBTB33, HOXB13, RELA, HIF1A, GATA3, MAX, ZNF143, ZFP69B, KLF4, NR2F2, ZNF334, BRD2, BHLHE40, AR, NOTCH3, BRD4, JUND, SCRT1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): LTN1,ADAMTS1,ADAMTS5
- Function elements
- Human SNPs: Alanine_transaminase_levels
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000154736,
ENSG00000198862,
- Related loop:
chr21:25600000-25625000~~chr21:28725000-28750000,
chr21:25725000-25750000~~chr21:28750000-28775000,
chr21:25875000-25900000~~chr21:28725000-28750000,
chr21:26175000-26200000~~chr21:28725000-28750000,
chr21:26700000-26725000~~chr21:28725000-28750000,
chr21:26725000-26750000~~chr21:28725000-28750000,
chr21:26750000-26775000~~chr21:28725000-28750000,
chr21:26800000-26825000~~chr21:28725000-28750000,
chr21:26825000-26850000~~chr21:28725000-28750000,
chr21:26825000-26850000~~chr21:28750000-28775000,
chr21:26850000-26875000~~chr21:28725000-28750000,
chr21:26850000-26875000~~chr21:28750000-28775000,
chr21:26950000-26975000~~chr21:28725000-28750000,
chr21:26950000-26975000~~chr21:28750000-28775000,
chr21:27200000-27225000~~chr21:28725000-28750000,
chr21:27300000-27325000~~chr21:28725000-28750000,
chr21:27325000-27350000~~chr21:28725000-28750000,
chr21:27350000-27375000~~chr21:28725000-28750000,
chr21:27450000-27475000~~chr21:28725000-28750000,
chr21:27475000-27500000~~chr21:28725000-28750000,
chr21:27550000-27575000~~chr21:28725000-28750000,
chr21:27600000-27625000~~chr21:28725000-28750000,
chr21:27675000-27700000~~chr21:28725000-28750000,
chr21:27700000-27725000~~chr21:28725000-28750000,
chr21:27750000-27775000~~chr21:28725000-28750000,
chr21:27775000-27800000~~chr21:28725000-28750000,
chr21:27800000-27825000~~chr21:28725000-28750000,
chr21:28025000-28050000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28725000-28750000,
chr21:28075000-28100000~~chr21:28725000-28750000,
chr21:28100000-28125000~~chr21:28725000-28750000,
chr21:28175000-28200000~~chr21:28725000-28750000,
chr21:28200000-28225000~~chr21:28725000-28750000,
chr21:28225000-28250000~~chr21:28725000-28750000,
chr21:28325000-28350000~~chr21:28725000-28750000,
chr21:28350000-28375000~~chr21:28725000-28750000,
chr21:28375000-28400000~~chr21:28725000-28750000,
chr21:28425000-28450000~~chr21:28725000-28750000,
chr21:28500000-28525000~~chr21:28725000-28750000,
chr21:28525000-28550000~~chr21:28725000-28750000,
chr21:28550000-28575000~~chr21:28725000-28750000,
chr21:28575000-28600000~~chr21:28725000-28750000,
chr21:28625000-28650000~~chr21:28725000-28750000,
chr21:28725000-28750000~~chr21:28925000-28950000,
chr21:28750000-28775000~~chr21:28900000-28925000,
chr21:28750000-28775000~~chr21:28925000-28950000,
chr21:28750000-28775000~~chr21:31075000-31100000,