- Basic information
- CohesinDB ID: CDBP00416032
- Locus: chr21-28773018-28773359
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Data sourse: GSE206145-NatGen2015, GSE110061, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 71%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SMARCA2, E2F7, SOX2, NME2, HNF1A, FOXA1, ZNF596, ATF3, NFIC, ZBTB44, PRDM1, HDAC3, SFPQ, MAF, TEAD1, ELF1, NFE2L2, LMO2, ESR1, HNF1B, JUN, CTCF, TCF12, BAF155, EP300, GATA6, PAX8, IRF4, ZNF528, ZNF350, TEAD4, ZNF92, TFAP2C, NANOG, MYCN, ZNF778, TOP2A, ERF, DUX4, SP4, HNF4G, HOXC5, ERG, MYC, SMARCA4, EOMES, RAD21, LHX2, RXRA, BATF3, STAT3, NKX3-1, RCOR1, ARNTL, NR3C1, CEBPB, CREB1, EZH2, BMPR1A, GRHL2, ZHX2, SPI1, HDAC2, GATA2, MXI1, RUNX1, CEBPA, NKX2-2, SIN3A, SMARCC1, PRDM10, MEF2A, RUNX2, GATA4, PBX4, DAXX, ATF2, PBX3, CHD1, FOS, MED1, MYB, SCRT2, PIAS1, TBX5, MAFK, SP1, HNF4A, REST, ZNF479, ARID1A, ASH2L, BCOR, FOXP1, PRDM6, PPARG, FOXA2, EBF1, FOXF1, ZBTB33, ZNF823, HOXB13, ZNF19, RELA, YY1, JUNB, GATA3, BATF, MAX, TLE3, NR2F2, ZNF334, NFKB1, PHOX2B, ELF3, BHLHE40, AR, TAF1, NCOR1, BRD4, SCRT1, JUND, MAZ, FOSL2
- Target gene symbol (double-evidenced CRMs): ADAMTS5,LTN1,ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000154734,
ENSG00000154736,
ENSG00000198862,
- Related loop:
chr21:25725000-25750000~~chr21:28750000-28775000,
chr21:26825000-26850000~~chr21:28750000-28775000,
chr21:26850000-26875000~~chr21:28750000-28775000,
chr21:26950000-26975000~~chr21:28750000-28775000,
chr21:28750000-28775000~~chr21:28900000-28925000,
chr21:28750000-28775000~~chr21:28925000-28950000,
chr21:28750000-28775000~~chr21:31075000-31100000,
chr21:28775000-28800000~~chr21:28925000-28950000,
chr21:28775000-28800000~~chr21:28950000-28975000,
chr21:28775000-28800000~~chr21:31075000-31100000,
chr21:28775000-28800000~~chr21:43275000-43300000,