- Basic information
- CohesinDB ID: CDBP00416115
- Locus: chr21-29080209-29080956
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Data sourse: GSE206145, ENCSR230ZWH, ENCSR153HNT, GSE73207
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Cell type: K-562, Liver, TF-1, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,Rad21,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 33%,
"7_Enh": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, HMG20A, ZNF660, SOX2, XBP1, PATZ1, FOXA1, HDGF, NFIC, ZFP64, CTCFL, RUNX3, CHD7, ZBTB44, MORC2, MECOM, PAX5, ZSCAN4, MYOG, JMJD1C, MAF, ELF1, TRIM28, TEAD1, ZNF629, LMO2, ESR1, OCA2, MLL, USF2, ZNF561, CTCF, TCF12, JUN, KLF1, LMO1, ZBTB20, DPF2, TRIM24, IRF4, RFX5, RAD51, ZNF528, SMC1, TEAD4, KMT2B, RBPJ, EED, POU2F2, CHD8, MYCN, BRD3, RUNX1T1, CDK7, TOP2A, MTA2, ZBTB17, DUX4, ZBTB48, STAT1, ZSCAN5A, ZSCAN21, MLLT3, GATAD1, SRF, NBN, ERG, ZBTB21, PBX1, ETS1, MYC, SMARCA4, HOMEZ, RAD21, GRHL3, RXRA, NKX2-1, GABPA, XRCC5, IKZF1, NFE2, NR2F6, ZNF639, VDR, ARNTL, NR3C1, CEBPB, KMT2A, CREB1, EZH2, KLF8, GRHL2, MRTFA, ZHX2, SPI1, GATA2, INTS13, ZNF644, GATAD2B, FLI1, SMARCA5, RELB, MRTFB, ZIM3, ZNF76, ETV5, RUNX1, BCL6, SMC1A, CEBPA, NKX2-2, ZNF335, ZFX, POU4F2, TRIM22, SMARCC1, ZNF549, PRDM10, RARA, ZNF35, RUNX2, OSR2, ZNF184, PBX4, ARNT, NFIB, DAXX, ZNF518A, ZEB2, ZNF10, FOS, CDK8, MED1, SPDEF, ZXDB, MYB, SCRT2, ZNF558, SMAD1, KLF9, EVI1, STAT5A, MAFK, BCL11A, SP1, USF1, NR4A1, ZNF317, ZBTB7A, PHIP, TCF3, PRDM6, SMC3, MLLT1, ZNF394, NFATC3, SKI, MEF2B, PPARG, ZNF207, FOXA2, EBF1, CREM, SS18, ZNF600, ZNF692, GTF2B, MEF2C, CDK9, HOXB13, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, TCF4, HIF1A, SKIL, GATA3, BATF, TAL1, MAX, SPIB, ZNF143, GATA1, ZNF592, SP7, TCF7L2, NR2F1, ZNF687, PKNOX1, MED, NFKB1, MYOD1, ZSCAN22, BRD2, TBX21, BHLHE40, PAX3-FOXO1, AR, ZNF324, ZNF366, ZBTB26, NOTCH3, BRD4, JUND, CLOCK, MAZ, ZSCAN23, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,KRTAP19-1,BACH1,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000156265,
ENSG00000156273,
ENSG00000171189,
ENSG00000184351,
- Related loop:
chr21:26175000-26200000~~chr21:29075000-29100000,
chr21:29075000-29100000~~chr21:29175000-29200000,
chr21:29075000-29100000~~chr21:29200000-29225000,
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29075000-29100000~~chr21:29325000-29350000,
chr21:29075000-29100000~~chr21:29350000-29375000,
chr21:29075000-29100000~~chr21:29375000-29400000,
chr21:29075000-29100000~~chr21:29450000-29475000,
chr21:29075000-29100000~~chr21:29475000-29500000,
chr21:29075000-29100000~~chr21:29650000-29675000,
chr21:29075000-29100000~~chr21:29825000-29850000,
chr21:29075000-29100000~~chr21:29850000-29875000,
chr21:29075000-29100000~~chr21:30025000-30050000,
chr21:29075000-29100000~~chr21:30175000-30200000,
chr21:29075000-29100000~~chr21:30450000-30475000,
chr21:29075000-29100000~~chr21:31075000-31100000,
chr21:29075000-29100000~~chr21:31175000-31200000,
chr21:29075000-29100000~~chr21:31600000-31625000,
chr21:29076937-29078408~~chr21:29504618-29505774,