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Basic information

CohesinDB ID: CDBP00416122

Locus: chr21-29099455-29101135

Data sourse: ENCSR000DZP, GSE67783, GSE86191, GSE98367, ShirahigeLab, ShirahigeLab-NatGen2015, ENCSR000BMY, GSE120943, GSE103477, GSE111537, GSE50893, GSE126755, GSE55407

Cell type: MDM, GM2610, GM19240, RPE, GM2630, Fibroblast, Neutrophil, GM18951, SNYDER, Monocytes, GM12878, GM2588, GM19239, THP-1, Macrophage, HCT-116, GM19238, OCI-AML-3, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 6% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.789

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 72% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 43%, "5_TxWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF22, ZNF384

Target gene symbol (double-evidenced CRMs): KRTAP19-1,GRIK1,BACH1,MAP3K7CL

Function elements

Human SNPs: .

Number of somatic mutations (coding): 48

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156265, ENSG00000156273, ENSG00000171189, ENSG00000184351,

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Deatailed information for cohesin site CDBP00416122