- Basic information
- CohesinDB ID: CDBP00416151
- Locus: chr21-29202234-29202641
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Data sourse: GSE62063, GSE98367
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Cell type: Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 73%,
"9_Het": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM28, FLI1, XBP1, ZNF317, BRD4, ZFP28, OTX2, ATF2, SETDB1, RELB, TAL1, BAHD1, JUN, RCOR1
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
- Related loop:
chr21:17700000-17725000~~chr21:29200000-29225000,
chr21:29075000-29100000~~chr21:29175000-29200000,
chr21:29075000-29100000~~chr21:29200000-29225000,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29300000-29325000,
chr21:29175000-29200000~~chr21:29350000-29375000,
chr21:29175000-29200000~~chr21:31250000-31275000,
chr21:29195502-29197292~~chr21:29297767-29300990,