- Basic information
- CohesinDB ID: CDBP00416153
- Locus: chr21-29207162-29210453
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Data sourse: ENCSR000EFJ, ENCSR000EAC, ENCSR230ZWH, GSE98367, GSE165895, ENCSR000HPG, ENCSR000BLY, GSE206145, GSE206145-NatGen2015, GSE62063, ENCSR000BMY, GSE120943, GSE103477, GSE131606, GSE108869, ENCSR917QNE
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Cell type: MDM, RPE, Fibroblast, Monocytes, GM12878, Ramos, DKO, HeLa-S3, IMR-90, SK-N-SH, Liver, Macrophage, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 57%,
"7_Enh": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFATC3, PGR, CTNNB1, MEF2B, FOXA2, SMC1A, ZNF425, TOP2A, SOX2, E2F8, MTA2, DUX4, STAT1, FOXA1, NBN, TRIM22, HOXB13, ERG, HOXC5, RELA, TARDBP, BMI1, RUNX2, CDK6, GATA4, MYC, RUNX3, PBX4, ARNT, DAXX, HIF1A, GRHL3, BACH1, OTX2, GABPA, BATF, IKZF1, ELF1, TRIM28, NR2F1, SMAD1, ZMYM3, ZNF217, ZNF687, ESR1, LMO2, ZNF334, TCF12, BAF155, EP300, TBX21, BHLHE40, AR, SPI1, DPF2, GATA2, GATAD2B, ATF7, ASH2L, RAD51, IKZF2, BRD4, SMARCA5, FOXP1, RELB, MLLT1
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8
- Function elements
- Human SNPs: Liver_enzyme_levels_(alanine_transaminase)
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops