- Basic information
- CohesinDB ID: CDBP00416158
- Locus: chr21-29223760-29224997
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Data sourse: GSE38395, GSE93080, GSE206145, ENCSR000BMY, GSE50893, GSE126755
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Cell type: GM12892, GM2630, GM2610, GM12878, GM2588, GM12890, hLCL, Neutrophil, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SMC3,Rad21,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 86%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CBX5, XBP1, FOXA1, TSC22D4, LYL1, ZNF90, ATF3, NFIC, RUNX3, CBFB, MECOM, JMJD1C, TEAD1, BCLAF1, TRIM28, LMO2, MLL, CTCF, TCF12, EP300, LMO1, IRF4, ZNF280A, RBPJ, EED, TOP2A, ID3, RUNX1T1, MTA2, DUX4, STAT1, SRF, BAHD1, ARID3A, ERG, ZNF597, MYC, ONECUT1, BATF3, GABPA, IKZF1, NFE2, NR2F6, VDR, NR3C1, CEBPB, KMT2A, CREB1, SPI1, IRF1, GATA2, RELB, HEXIM1-CDK9, RUNX1, CEBPA, ZNF534, CBX8, TRIM22, MEF2A, GATA4, ARNT, ATF2, ETV6, FOXM1, FOS, SUPT5H, CDK8, MED1, MYB, SMAD1, C11orf30, SETDB1, EVI1, STAT5A, NIPBL, BCL11A, HNF4A, NR4A1, ZBTB7A, ATF7, TCF3, FOXP1, NFATC3, SKI, MEF2B, FOXA2, MTA3, CREM, MEIS1, NFATC1, ZBED1, GTF2B, MEF2C, CDK9, HOXB13, BCL3, KDM1A, RELA, JUNB, SKIL, HIF1A, OTX2, GATA3, BATF, TAL1, ZNF143, GATA1, NR2F2, NR2F1, ELF3, ZFP28, BHLHE40, AR, ZBTB16, EGR1, RNF2, IKZF2, BRD4, ZNF316
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops