- Basic information
- CohesinDB ID: CDBP00416177
- Locus: chr21-29277558-29277792
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Data sourse: ENCSR230ZWH
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFIA, CEBPA, LCORL, ZNF660, FOXA2, ZFX, XBP1, ZNF30, FOXA1, HOXB13, ERG, ZNF19, YY1, ZNF384, ZNF112, NFIC, ONECUT1, MYC, ZNF184, RAD21, ZBTB44, NFIB, RXRA, MORC2, CDX2, TLE3, ZNF544, PIAS1, SMAD1, KLF10, KLF8, ZNF37A, ZNF577, NUP98-HOXA9, BAF155, SPI1, HNF4A, AR, GATA2, ARID1A, NOTCH3, FOXP1, PRDM6, ZNF350, ZIM3, ZNF92, GATAD2A
- Target gene symbol (double-evidenced CRMs): GRIK1,TIAM1,CCT8,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000171189,
ENSG00000156299,
- Related loop:
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,