- Basic information
- CohesinDB ID: CDBP00416179
- Locus: chr21-29287057-29289061
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE105028, GSE103477, GSE25021, ENCSR917QNE, ENCSR000BTU, GSE93080, GSE138405, GSE76893, GSE101921, GSE206145-NatGen2015, ENCSR703TNG, GSE98367, ENCSR000BLS, ENCSR000ECE, ENCSR000BMY, ENCSR635OSG, GSE97394, GSE55407, ENCSR000BTQ, GSE129526, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE50893, GSE126755, ENCSR000ECS
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Cell type: MDM, GM19240, Liver, HuCC-T1, H9-hESC, GM2630, HMEC, Fibroblast, Ishikawa, HeLa-S3, H1-hESC, GM12878, GM2588, THP-1, Macrophage, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, MCF-10A, Hep-G2, Neutrophil
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 13% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.744
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 57%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, HMG20A, NME2, XBP1, FOXA1, RXRB, KDM3A, LYL1, ATF3, THRB, MXD4, ZNF189, MECOM, JMJD1C, ELF1, TEAD1, TRIM28, RCOR2, LMO2, MLL, OCA2, JUN, TCF12, EP300, SOX5, TRIM24, FOXA3, KMT2B, ZNF175, GATAD2A, MLX, RBPJ, CHD8, STAT1, GATAD1, SAP130, ARID3A, HNF4G, ERG, ETS1, MYC, ONECUT1, HOMEZ, RAD21, GRHL3, RXRA, GABPA, STAT3, XRCC5, ZNF614, MIER3, ARNTL, VDR, CEBPB, KMT2A, CREB1, ZNF652, SPI1, TFE3, MIXL1, IRF1, HDAC2, GATA2, ZNF644, FLI1, DRAP1, ZGPAT, NFIL3, MRTFB, ETV5, RUNX1, THAP11, BCL6, SMC1A, CEBPA, NKX2-2, SOX13, ZFX, SMAD3, SMARCC1, RARA, RUNX2, PBX4, HMBOX1, SMAD4, ETV6, FOS, CDK8, TEAD3, TERF1, CEBPD, MYB, EVI1, STAT5A, SP1, HNF4A, NR4A1, REST, FOXP1, ETV4, PPARG, FOXA2, CREM, SS18, MIER2, MEF2C, ZNF823, TCF7, CDK9, KDM1A, YY1, RELA, JUNB, HIF1A, TAL1, MAX, CEBPG, NR2F2, ELF3, KAT8, ARID4B, RXR, ZBTB26, NOTCH3, BRD4, JUND, CUX1
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,TIAM1,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000171189,
ENSG00000156299,
- Related loop:
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,