- Basic information
- CohesinDB ID: CDBP00416180
- Locus: chr21-29289505-29290651
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Data sourse: ENCSR230ZWH, GSE72082, ENCSR879KXD, ENCSR000EDE, GSE68388, GSE116344, ENCSR000ECS, ENCSR917QNE
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Cell type: RH4, Hep-G2, HeLa-S3, K-562, Liver, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SMC3,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 64%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, FOXA1, PBX2, ATF3, NFIC, SMARCE1, ELF1, TRIM28, NFE2L2, ESR1, CTCF, JUN, EP300, E4F1, MNT, DPF2, PAX8, SOX6, E2F1, SMC1, TEAD4, PDX1, DUX4, STAT1, SRF, ARID3A, ETS1, SMARCA4, ARID1B, RAD21, RXRA, STAT3, NKX3-1, NFE2, RCOR1, NR2F6, CEBPB, KMT2A, EBF3, GATA2, FLI1, ATF1, RUNX1, SMC1A, MAFG, HDAC1, BCL6, CEBPA, SMARCC1, GATA4, ARNT, BACH1, ATF2, HMBOX1, FOXM1, MAFB, FOS, CDK8, C11orf30, STAT5A, MAFK, BCL11A, HNF4A, POU2F3, ATF7, HOXA9, PRDM6, SMC3, STAG2, STAG1, FOXA2, CREM, MEIS1, SS18, ZSCAN16, MAFF, FOXF1, ZNF823, HOXB13, KDM1A, RELA, JUNB, ZNF830, OTX2, GATA3, TAL1, GATA1, GFI1B, TP53, PKNOX1, ELF3, JUND, ZNF316
- Target gene symbol (double-evidenced CRMs): CCT8,GRIK1,TIAM1,MAP3K7CL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000171189,
ENSG00000156299,
- Related loop:
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,