- Basic information
- CohesinDB ID: CDBP00416182
- Locus: chr21-29295121-29295701
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Data sourse: GSE50893, GSE120943, ENCSR153HNT, GSE98367
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Cell type: K-562, Monocytes, Macrophage, GM2588
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 43%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: XBP1, FOXA1, NFIC, RUNX3, MECOM, PAX5, JMJD1C, ELF1, TRIM28, BCLAF1, USF2, CTCF, TCF12, BAF155, DPF2, TRIM24, IRF4, RAD51, RBPJ, EED, POU2F2, CHD8, MTA2, STAT1, ZNF485, NBN, ARID3A, ERG, PBX1, MYC, RAD21, NKX3-1, IKZF1, TERF2, NR3C1, CEBPB, KMT2A, CREB1, SPI1, ZNF257, INTS13, GATA2, GATAD2B, FLI1, SMARCA5, RELB, RUNX1, BCL6, SMC1A, CEBPA, TRIM22, CREBBP, CDK6, GATA4, ATF2, PBX3, ETV6, CHD1, CDK8, MED1, TERF1, MYB, ZNF680, ZNF331, PIAS1, ZNF3, EVI1, SETDB1, NIPBL, SP1, BCL11A, ARID1A, ATF7, TCF3, FOXP1, BCOR, NCOR2, MLLT1, NFATC3, MEF2B, FOXA2, MTA3, EBF1, GTF2B, HOXB13, KDM1A, YY1, RELA, TARDBP, BRG1, SKIL, BATF, TAL1, MAX, SPIB, ZNF143, TLE3, ZNF687, PKNOX1, MED, NFKB1, ELF3, TBX21, BHLHE40, AR, RB1, NCOR1, IKZF2, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,TIAM1,BACH1,CCT8,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000156273,
ENSG00000171189,
ENSG00000156299,
- Related loop:
chr21:29050000-29075000~~chr21:29300000-29325000,
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29089226-29091194~~chr21:29297826-29300567,
chr21:29089325-29091118~~chr21:29297646-29300784,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29162298-29165502~~chr21:29297765-29300738,
chr21:29162305-29165453~~chr21:29297767-29300990,
chr21:29162307-29165517~~chr21:29297019-29300536,
chr21:29162310-29165464~~chr21:29297711-29300996,
chr21:29162377-29165492~~chr21:29297770-29301094,
chr21:29162378-29165498~~chr21:29297718-29300698,
chr21:29162871-29165217~~chr21:29297676-29300550,
chr21:29163305-29165274~~chr21:29297780-29300635,
chr21:29163333-29165304~~chr21:29297741-29300792,
chr21:29163629-29165264~~chr21:29297785-29301017,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29300000-29325000,
chr21:29181177-29183351~~chr21:29297767-29300990,
chr21:29195502-29197292~~chr21:29297767-29300990,
chr21:29230443-29234332~~chr21:29297765-29300738,
chr21:29232806-29234518~~chr21:29297832-29300927,
chr21:29235070-29236701~~chr21:29297903-29299607,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,
chr21:29300000-29325000~~chr21:33200000-33225000,