- Basic information
- CohesinDB ID: CDBP00416198
- Locus: chr21-29327253-29327738
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 59%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, PPARG, ZNF263, ZSCAN5C, ID3, ZNF600, XBP1, GTF2B, FOXA1, HOXB13, RELA, MYC, RUNX2, HIF1A, ZNF189, ZNF143, SUPT5H, CDK8, TEAD1, ZNF573, SCRT2, EZH2, SUPT16H, ESR1, ZNF334, CTCF, RBM22, BCL11A, AR, SCRT1, BRD4, FOXP1
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,BACH1,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 34
- Number of somatic mutations (non-coding): 17
- Related genes and loops