Deatailed information for cohesin site CDBP00416200
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- Basic information
- CohesinDB ID: CDBP00416200
- Locus: chr21-29331917-29333531
- Data sourse: ENCSR000EFJ, GSE67783, GSE98367, GSE111913, ENCSR000HPG, ENCSR000BLY, GSE206145, GSE206145-NatGen2015, GSE135093, GSE120943, GSE68388, GSE165895
- Cell type: RPE, Macrophage, Fibroblast, Monocytes, IMR-90, SK-N-SH, RT-112, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 54%,
"4_Tx": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: FOXO1, FOSL1, CHD8, FOXA2, BRD3, EBF1, TEAD4, ZNF600, XBP1, ZBTB17, SMAD3, ZBTB48, WT1, FOXA1, ZBTB33, MEF2C, ZNF300, ERG, MEF2A, RELA, ZNF384, JUNB, ATF3, RUNX2, MYC, NFIC, OSR2, GATA4, RAD21, ZNF362, PBX4, BACH1, RXRA, NKX2-1, GATA3, PRDM9, GABPA, ZNF189, TAL1, MAX, PBX3, STAT3, SUPT5H, GATA1, FOS, MED1, VDR, NR3C1, MAF, CEBPB, TEAD1, TRIM28, SUPT16H, MLL, HNF1B, FEZF1, EBF3, ZFP91, BRD2, ZHX2, RBM22, SPI1, EP300, JUN, TCF12, BCL11A, GATA2, FLI1, HSF1, BRD4, JUND, E2F1, MRTFB, SMC3, ZNF24, FOSL2
- Target gene symbol (double-evidenced CRMs): BACH1,MAP3K7CL,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops
Tools:
- Assay
