Deatailed information for cohesin site CDBP00416204
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- Basic information
- CohesinDB ID: CDBP00416204
- Locus: chr21-29339151-29339890
- Data sourse: GSE67783, GSE98367, ENCSR879KXD, GSE206145-NatGen2015, GSE120943
- Cell type: Fibroblast, Monocytes, K-562, HSPC, Macrophage
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 73%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZSCAN5D, FOXA2, STAT1, FOXA1, ZNF770, ERG2, HOXB13, BCL3, ZFHX2, CREBBP, ZNF362, IKZF1, SNAI2, PIAS1, SUPT16H, RBM22, PAX3-FOXO1, AR, PHIP, MAZ, FOSL2
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL,BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops
Tools:
- Assay
