- Basic information
- CohesinDB ID: CDBP00416206
- Locus: chr21-29341735-29344513
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Data sourse: ENCSR230ZWH, ENCSR000BLY, ENCSR150EFU, GSE103477, GSE111537, GSE131606, GSE165895, ENCSR000EFJ, ENCSR917QNE, ENCSR000DZP, GSE86191, GSE138405, GSE101921, GSE135093, ShirahigeLab-NatGen2015, GSE120943, GSE116344, GSE94872, GSE98367, ENCSR000EHW, GSE85526, ShirahigeLab, ENCSR000BMY, ENCSR000EHX, ENCSR000HPG, ENCSR153HNT, GSE68388, GSE83726, GSE50893, ENCSR000ECS, GSE73207
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Cell type: MDM, RH4, GM2610, Liver, HuCC-T1, RPE, GM2630, Fibroblast, HEKn, GM12890, HeLa-S3, IMR-90, K-562, HFFc6, DKO, Monocytes, TF-1, GM12878, SK-N-SH, Macrophage, GM12892, Hela-Kyoto, HCT-116, A-549, HUVEC, HCAEC, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 17% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.700
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 42%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, ZSCAN5C, E2F7, MEIS2, XBP1, PATZ1, FOXA1, LEO1, PBX2, ZFHX2, ATF3, NFIC, HMGB2, RUNX3, PRDM1, CHD7, ZNF487, CBFB, ZNF273, ZNF189, PAX5, ZSCAN4, ZNF629, MAF, TEAD1, TRIM28, BCLAF1, ETV1, ELF1, KLF10, ESR1, OCA2, JUN, TCF12, CTCF, BAF155, KLF1, EP300, GATA6, DPF2, SOX4, SIX5, IRF4, TRIM24, RFX5, E2F1, SMC1, TEAD4, GATAD2A, TFAP2C, EED, GLIS1, NANOG, CHD8, POU2F2, ZNF263, MYCN, TOP2A, POU5F1, ZSCAN21, ZBTB17, DUX4, ZBTB48, STAT1, SRF, ARID3A, ERG2, ERG, HOXC5, ZBTB21, ZNF597, NFKB2, ETS1, ONECUT1, MYC, EOMES, SMARCA4, TSHZ1, RAD21, FOXP2, RXRA, BATF3, GABPA, STAT3, ZNF398, IKZF1, RCOR1, ZNF639, VDR, ARNTL, NR3C1, ESRRA, CEBPB, CREB1, EZH2, KLF8, BMPR1A, FEZF1, ZHX2, SPI1, EHF, IRF1, GATA2, FLI1, RELB, MRTFB, ZIM3, RUNX1, BCL6, SMC1A, CEBPA, MTA3, SIN3A, ZNF534, ZFX, ZNF335, AFF4, SMAD3, ZNF770, TET2, ERG3, ZNF18, PRDM10, SMARCC1, TWIST1, MEF2A, ZBTB2, NOTCH1, RUNX2, CDK6, GATA4, OSR2, ZNF184, SP3, PBX4, ARNT, DAXX, BACH1, ATF2, ZNF708, ZEB2, ZNF518A, PRDM9, PBX3, ETV6, ZNF10, CHD1, CDK8, FOS, FOXM1, SUPT5H, MED1, PML, ZXDB, ZNF558, SCRT2, PIAS1, MYB, SUPT16H, CEBPD, TBX5, KLF16, NUP98-HOXA9, RBM22, BCL11A, SP1, GSPT2, HNF4A, MAFK, USF1, REST, ATF7, ASH2L, HOXA9, PHIP, TCF3, FOXP1, PRDM6, SMC3, PPARG, FOXA2, TBL1X, EBF1, HDAC6, CREM, NFATC1, ZNF600, ZNF692, GTF2B, WT1, ZBED1, ZSCAN16, FOXF1, PAF1, ZBTB33, TCF7, HOXB13, BCL3, KDM1A, ZNF19, YY1, RELA, NEUROD1, JUNB, ZIC2, HIF1A, OTX2, GATA3, BATF, TAL1, MAX, GATA1, ZNF143, AGO2, TLE3, CEBPG, BCL11B, SP7, NEUROG2, TP53, PKNOX1, ZNF334, NFKB1, MYOD1, EGR2, BRD2, ELF3, TBX21, BHLHE40, AR, TAF1, ZNF324, ZNF366, HEXIM1, ZBTB42, ZBTB26, NCOR1, IKZF2, JUND, BRD4, SCRT1, MAZ, ZSCAN23, BRCA1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): CCT8,MAP3K7CL,BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 216
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000156273,
- Related loop:
chr21:29075000-29100000~~chr21:29325000-29350000,
chr21:29089019-29091765~~chr21:29347581-29349365,
chr21:29089067-29091786~~chr21:29347632-29349367,
chr21:29089072-29091405~~chr21:29347617-29349359,
chr21:29089160-29091117~~chr21:29347755-29349310,
chr21:29089167-29091099~~chr21:29347660-29349347,
chr21:29089188-29091090~~chr21:29347684-29349339,
chr21:29089226-29091194~~chr21:29347657-29349380,
chr21:29089236-29091115~~chr21:29347637-29349372,
chr21:29089247-29091085~~chr21:29347692-29349326,
chr21:29089253-29091784~~chr21:29347649-29349937,
chr21:29089253-29091866~~chr21:29347600-29349350,
chr21:29089261-29091354~~chr21:29347652-29349375,
chr21:29089274-29091757~~chr21:29347569-29349367,
chr21:29089288-29091868~~chr21:29347684-29349364,
chr21:29089299-29091014~~chr21:29347749-29349306,
chr21:29089315-29091812~~chr21:29347653-29349368,
chr21:29089332-29090990~~chr21:29347656-29349372,
chr21:29089350-29091002~~chr21:29347655-29349349,
chr21:29089353-29091857~~chr21:29347586-29349777,
chr21:29089362-29091799~~chr21:29347653-29349341,
chr21:29089364-29091181~~chr21:29347677-29349847,
chr21:29089382-29091075~~chr21:29347811-29349358,
chr21:29089486-29091829~~chr21:29347582-29349316,
chr21:29089531-29091070~~chr21:29347741-29349366,
chr21:29089580-29091034~~chr21:29347821-29349746,
chr21:29091949-29093553~~chr21:29347639-29349364,
chr21:29091975-29093600~~chr21:29347653-29349368,
chr21:29092103-29093370~~chr21:29347649-29349937,
chr21:29150000-29175000~~chr21:29325000-29350000,
chr21:29162305-29165453~~chr21:29347649-29349937,
chr21:29162316-29165407~~chr21:29347639-29349336,
chr21:29162347-29165506~~chr21:29347569-29349367,
chr21:29162378-29165498~~chr21:29347586-29349777,
chr21:29163284-29165488~~chr21:29347632-29349367,
chr21:29163333-29165304~~chr21:29347811-29349358,
chr21:29163439-29165245~~chr21:29347811-29349339,
chr21:29163509-29165242~~chr21:29347678-29349344,
chr21:29163629-29165264~~chr21:29347677-29349365,
chr21:29163714-29165477~~chr21:29347632-29349309,
chr21:29163725-29165459~~chr21:29347656-29349372,
chr21:29163734-29165276~~chr21:29347684-29349339,
chr21:29163746-29165675~~chr21:29347638-29349313,
chr21:29163756-29165286~~chr21:29347699-29349347,
chr21:29163801-29165267~~chr21:29347792-29349359,
chr21:29163801-29165269~~chr21:29347138-29349317,
chr21:29181313-29182963~~chr21:29347735-29349361,
chr21:29225000-29250000~~chr21:29325000-29350000,
chr21:29232431-29234308~~chr21:29347637-29349372,
chr21:29267340-29269377~~chr21:29347233-29349373,
chr21:29347639-29349364~~chr21:29848859-29851155,