- Basic information
- CohesinDB ID: CDBP00416209
- Locus: chr21-29352759-29353073
-
Data sourse: GSE206145-NatGen2015, GSE67783
-
Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 63%,
"4_Tx": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: SNAI2, OGG1, SUPT16H, ZFX
- Target gene symbol (double-evidenced CRMs): GRIK1,MAP3K7CL,CCT8
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156261,
ENSG00000156265,
ENSG00000171189,
- Related loop:
chr21:29075000-29100000~~chr21:29325000-29350000,
chr21:29075000-29100000~~chr21:29350000-29375000,
chr21:29089019-29091765~~chr21:29347581-29349365,
chr21:29089067-29091786~~chr21:29347632-29349367,
chr21:29089072-29091405~~chr21:29347617-29349359,
chr21:29089160-29091117~~chr21:29347755-29349310,
chr21:29089167-29091099~~chr21:29347660-29349347,
chr21:29089188-29091090~~chr21:29347684-29349339,
chr21:29089226-29091194~~chr21:29347657-29349380,
chr21:29089236-29091115~~chr21:29347637-29349372,
chr21:29089247-29091085~~chr21:29347692-29349326,
chr21:29089253-29091784~~chr21:29347649-29349937,
chr21:29089253-29091866~~chr21:29347600-29349350,
chr21:29089261-29091354~~chr21:29347652-29349375,
chr21:29089274-29091757~~chr21:29347569-29349367,
chr21:29089288-29091868~~chr21:29347684-29349364,
chr21:29089299-29091014~~chr21:29347749-29349306,
chr21:29089315-29091812~~chr21:29347653-29349368,
chr21:29089332-29090990~~chr21:29347656-29349372,
chr21:29089350-29091002~~chr21:29347655-29349349,
chr21:29089353-29091857~~chr21:29347586-29349777,
chr21:29089362-29091799~~chr21:29347653-29349341,
chr21:29089364-29091181~~chr21:29347677-29349847,
chr21:29089382-29091075~~chr21:29347811-29349358,
chr21:29089486-29091829~~chr21:29347582-29349316,
chr21:29089531-29091070~~chr21:29347741-29349366,
chr21:29089580-29091034~~chr21:29347821-29349746,
chr21:29091949-29093553~~chr21:29347639-29349364,
chr21:29091975-29093600~~chr21:29347653-29349368,
chr21:29092103-29093370~~chr21:29347649-29349937,
chr21:29100000-29125000~~chr21:29350000-29375000,
chr21:29150000-29175000~~chr21:29325000-29350000,
chr21:29150000-29175000~~chr21:29350000-29375000,
chr21:29162305-29165453~~chr21:29347649-29349937,
chr21:29162316-29165407~~chr21:29347639-29349336,
chr21:29162347-29165506~~chr21:29347569-29349367,
chr21:29162378-29165498~~chr21:29347586-29349777,
chr21:29163284-29165488~~chr21:29347632-29349367,
chr21:29163333-29165304~~chr21:29347811-29349358,
chr21:29163439-29165245~~chr21:29347811-29349339,
chr21:29163509-29165242~~chr21:29347678-29349344,
chr21:29163629-29165264~~chr21:29347677-29349365,
chr21:29163714-29165477~~chr21:29347632-29349309,
chr21:29163725-29165459~~chr21:29347656-29349372,
chr21:29163734-29165276~~chr21:29347684-29349339,
chr21:29163746-29165675~~chr21:29347638-29349313,
chr21:29163756-29165286~~chr21:29347699-29349347,
chr21:29163801-29165267~~chr21:29347792-29349359,
chr21:29163801-29165269~~chr21:29347138-29349317,
chr21:29175000-29200000~~chr21:29350000-29375000,
chr21:29181313-29182963~~chr21:29347735-29349361,
chr21:29225000-29250000~~chr21:29325000-29350000,
chr21:29225000-29250000~~chr21:29350000-29375000,
chr21:29232431-29234308~~chr21:29347637-29349372,
chr21:29267340-29269377~~chr21:29347233-29349373,
chr21:29347639-29349364~~chr21:29848859-29851155,
chr21:29350000-29375000~~chr21:29450000-29475000,
chr21:29350000-29375000~~chr21:29475000-29500000,
chr21:29350000-29375000~~chr21:29675000-29700000,
chr21:29350000-29375000~~chr21:29800000-29825000,
chr21:29350000-29375000~~chr21:29825000-29850000,
chr21:29350000-29375000~~chr21:29850000-29875000,
chr21:29350000-29375000~~chr21:30175000-30200000,
chr21:29350000-29375000~~chr21:31075000-31100000,