Browse_each

Basic information

CohesinDB ID: CDBP00416210

Locus: chr21-29354819-29355356

Data sourse: GSE50893, ENCSR153HNT

Cell type: K-562, GM18951

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 41%, "8_ZNF/Rpts": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, BCL6, ZSCAN5D, CBX3, POU4F2, XBP1, GTF2B, FOXA1, ZNF205, ERG, HDGF, MYC, CDK6, GRHL3, HIF1A, ARNT, GATA3, MAX, SUPT5H, ZNF143, ARNTL, TERF1, TRIM28, EZH2, OCA2, GRHL2, CTCF, RBM22, TAF1, E2F6, EGLN2, POU2F3, NOTCH3, EED

Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,GRIK1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000171189,

eachgene

Deatailed information for cohesin site CDBP00416210