Deatailed information for cohesin site CDBP00416213
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00416213
- Locus: chr21-29365312-29366158
- Data sourse: ENCSR230ZWH, ENCSR153HNT, ENCSR917QNE
- Cell type: K-562, Liver
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 63%,
"15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ARNTL, NEUROD1, ONECUT1, POU5F1, SIX2, SOX2, ZFX, RAD21, GRHL3, ARNT, JUND, RXRA, OTX2, NME2, PRDM9, MAZ, YY1, RBM22, SP1, HNF4A
- Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene: ENSG00000156261, ENSG00000156265, ENSG00000171189,
- Related loop: chr21:29075000-29100000~~chr21:29350000-29375000, chr21:29089253-29091866~~chr21:29371097-29373582, chr21:29089315-29091812~~chr21:29371099-29373462, chr21:29089318-29091030~~chr21:29371154-29373646, chr21:29089486-29091829~~chr21:29370899-29373222, chr21:29089489-29091865~~chr21:29371051-29373223, chr21:29091975-29093600~~chr21:29371099-29373462, chr21:29092120-29093357~~chr21:29370899-29373222, chr21:29100000-29125000~~chr21:29350000-29375000, chr21:29150000-29175000~~chr21:29350000-29375000, chr21:29162307-29165517~~chr21:29371097-29373582, chr21:29163344-29165555~~chr21:29371154-29373646, chr21:29163690-29165671~~chr21:29370899-29373222, chr21:29163723-29165657~~chr21:29371051-29373223, chr21:29175000-29200000~~chr21:29350000-29375000, chr21:29225000-29250000~~chr21:29350000-29375000, chr21:29350000-29375000~~chr21:29450000-29475000, chr21:29350000-29375000~~chr21:29475000-29500000, chr21:29350000-29375000~~chr21:29675000-29700000, chr21:29350000-29375000~~chr21:29800000-29825000, chr21:29350000-29375000~~chr21:29825000-29850000, chr21:29350000-29375000~~chr21:29850000-29875000, chr21:29350000-29375000~~chr21:30175000-30200000, chr21:29350000-29375000~~chr21:31075000-31100000, chr21:29360611-29362507~~chr21:29848684-29850668, chr21:29360755-29362361~~chr21:29849075-29850682, chr21:29360790-29362311~~chr21:29848956-29850672, chr21:29360948-29362233~~chr21:29848987-29850748, chr21:29360960-29362381~~chr21:29848731-29851135, chr21:29360961-29362448~~chr21:29848870-29851001,
Tools:
- Assay
