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Basic information

CohesinDB ID: CDBP00416213

Locus: chr21-29365312-29366158

Data sourse: ENCSR230ZWH, ENCSR153HNT, ENCSR917QNE

Cell type: K-562, Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 63%, "15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ARNTL, NEUROD1, ONECUT1, POU5F1, SIX2, SOX2, ZFX, RAD21, GRHL3, ARNT, JUND, RXRA, OTX2, NME2, PRDM9, MAZ, YY1, RBM22, SP1, HNF4A

Target gene symbol (double-evidenced CRMs): MAP3K7CL,CCT8,GRIK1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000156261, ENSG00000156265, ENSG00000171189,

eachgene

Deatailed information for cohesin site CDBP00416213